Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02425 ATGGAGGACAGAGGAGGAACCATTCTGATGAAAAGGTATGAGGTGGGGCGTATGCTTGGGCAAGGAAACTTTGCAAAAGTTTACCATGCAAGGAACCTCAAGACGGGGCAGAGTGTTGCCATCAAAGTCCTTAACAAGGATATGGTGATGAAGTTTGGCATGGCTGAGCAAATCAAGCGTGAAATCTCGGTGATGCGGCTCGTGAGGCACCCCAACATTGTGCATCTCTACGAGGTGATGGCAAGCAAGACCAAGATATACTTTGTGATGGAATATGTCAAAGGTGGTGAGCTTTTTGACAAGGTGTCCCTAGGGAGGTTGAAAGAAGACCTGGCCAGAAAATATTTCCAGCAATTGATGGATGCCATTGATCTTTGCCACAGCAGAGGAGTGTATCACCGCGACCTCAAGCCGGAGAACCTTCTCTTGGACGAAAATGGGAACCTCAAGGTCACAGACTTCGGCTTGAGCGCCTTGACGGAGAGCAGAAAGAGTGACGGCCTTCTTCACACAACTTGTGGAACTCCGGCCTATGTGGCTCCAGAGGTGATTAGGAAGAAAGGCTACGACGGAGCCAAGGCAGATATTTGGTCTTGTGGCGTGATTCTTTATGTTCTGTTGGCTGGATATCTTCCTTTCCGGGATAAGAATCTCATTGAAATGTATAGAAAGATTGCCAAAGCAGATTTCAAGTGCCCTCAATGGTTCCCTGTTGATGCTAAAAGGCTTCTCTACAGGATTCTTGATCCTAATCCAATAACCAGAGTTACTATTCCCAGAATTATGGAGAGTAGATGGTTCCAAAAGGGGTATGAGCACAATGCATTATCCCATCTCCCACCTTTGTCCCCAAGATGGGGTGGTGATGACTGTATCTCCGATGTTGAGGCTGCATTTGCATTTACCTACTCCTCCTCCTCGTCCTTCTCCTACTCAGGAGAAGAAGATGAAGAAGTAGTAGTTCCCATGAAGCTGTATCGCTTCAATGCGTTTGATATCATAGCACTTTCCTCAGGGTTTGATCTCTCTGGCTTGTTTGAGAAAGATAACAGTCAGAGACAACATGCAATGTTTATAACAAGAATGCCACCAGCAGTGATTGCATCAAAGCTGGAGGAGATAGGACAGATGGATAATAGTTTTAAGGTGATGAGGAATAATGGAGTTGTTAGGTTGGAAAAAAGAAATACAAAGGGAACCAGCCAACTCAGCATAGATACAGAGATTTTCCAAGTTACAGATTCCTTTCATGTTGTTGAGATCAACAAGGTACTTGGGGACTCATTGGAATACACCACATTCTTGGAGCACCATCTTAAGCCTTTCCTTGATGAAATTGTTTTGGCTTGGCAAGGATGTCACAACCACCAATAA 1374 0.4505 MEDRGGTILMKRYEVGRMLGQGNFAKVYHARNLKTGQSVAIKVLNKDMVMKFGMAEQIKREISVMRLVRHPNIVHLYEVMASKTKIYFVMEYVKGGELFDKVSLGRLKEDLARKYFQQLMDAIDLCHSRGVYHRDLKPENLLLDENGNLKVTDFGLSALTESRKSDGLLHTTCGTPAYVAPEVIRKKGYDGAKADIWSCGVILYVLLAGYLPFRDKNLIEMYRKIAKADFKCPQWFPVDAKRLLYRILDPNPITRVTIPRIMESRWFQKGYEHNALSHLPPLSPRWGGDDCISDVEAAFAFTYSSSSSFSYSGEEDEEVVVPMKLYRFNAFDIIALSSGFDLSGLFEKDNSQRQHAMFITRMPPAVIASKLEEIGQMDNSFKVMRNNGVVRLEKRNTKGTSQLSIDTEIFQVTDSFHVVEINKVLGDSLEYTTFLEHHLKPFLDEIVLAWQGCHNHQ 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02425 457 CDD STKc_SnRK3 12 266 - -
Aip01g02425 457 SUPERFAMILY Protein kinase-like (PK-like) 9 295 IPR011009 -
Aip01g02425 457 Gene3D Transferase(Phosphotransferase) domain 1 6 297 - -
Aip01g02425 457 Gene3D Kinase associated domain 1, KA1 324 448 - -
Aip01g02425 457 Pfam Protein kinase domain 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g02425 457 CDD CIPK_C 329 444 - -
Aip01g02425 457 ProSitePatterns Protein kinases ATP-binding region signature. 19 51 IPR017441 GO:0005524
Aip01g02425 457 Pfam NAF domain 328 384 IPR004041 GO:0007165
Aip01g02425 457 PANTHER - 4 454 - -
Aip01g02425 457 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 4 454 - -
Aip01g02425 457 SMART serkin_6 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g02425 457 ProSiteProfiles NAF domain profile. 323 347 IPR018451 GO:0007165
Aip01g02425 457 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Aip01g02425 457 ProSiteProfiles Protein kinase domain profile. 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02425 Aip-Chr1 123852476 123855980 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02425 3 452 CBL-interacting serine-threonine protein kinases AT5G45820 60.619 0.0 554
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Aip01g02425 Pkinase 2.1e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02425 K07198 - gmx:100807927 610.527