Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02423 ATGGCAGAACTCGCACCAATGAGCTCCGGCGACAGCAGAAGACAGCTGAGAGACCAAGAGACTCAGACAGGACGCAGAGTAGACGACCCAGCTGCTACTACTACTCGTAACACGGTGGATTTTTTTTTGTTTTTGGAAGGAGCACTGCTCATAGTGTGTTTGTATTGCAATCCAGGAGCTAGAGCATTACCCTCCTCATTGAAACCAGGGACAAAACAAGGTTATGGATGTTCCCGCTGTCTTCCTTGTCAGAAGCAGAGAAGAAGAAAAAAGTGGGTTGCATCTGGATTGATGGAGGTACACCTGCTGCACAAGGCAACAATTGGTTACAGATTTCCAGGAAAAGATTATATCAAGGCAGCTCTGCAATCCATTAAAGCTGGAGAAGTTGGATTAACTTTAACTGCTGCAAGCACAGTTATCTTTGCTGAACAATCCTGGACTCCAGATGACCTAATTCAGGCCGAAGATCGCGCTCATAGAATTGGCCACGTCTCATCAGTAAATATATACTACTTGTTGGCAAATGATATGGTTGATGACATCATATGGGATGTGGTGCAATTCAAACCGGATAATTTGGGGCAGATGTTAGATGGCCATGAGAACACCTTAGCTGTGTCAAATAATCAGCCATTGAGTAGCCCTGCAAAGCATACTACTATTGAGCATAGCCCTTCAAGGCAGAGAACTCTTGACCAGTTTGTCAGAAGATGTGATAAAGTGGATAGGTCGGAACATCAGCCTGACCTGAGACGGACCTGTCAGTCATGA 774 0.4522 MAELAPMSSGDSRRQLRDQETQTGRRVDDPAATTTRNTVDFFLFLEGALLIVCLYCNPGARALPSSLKPGTKQGYGCSRCLPCQKQRRRKKWVASGLMEVHLLHKATIGYRFPGKDYIKAALQSIKAGEVGLTLTAASTVIFAEQSWTPDDLIQAEDRAHRIGHVSSVNIYYLLANDMVDDIIWDVVQFKPDNLGQMLDGHENTLAVSNNQPLSSPAKHTTIEHSPSRQRTLDQFVRRCDKVDRSEHQPDLRRTCQS 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02423 257 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 111 241 - -
Aip01g02423 257 CDD SF2_C_SNF 111 174 - -
Aip01g02423 257 Pfam Helicase conserved C-terminal domain 121 163 IPR001650 -
Aip01g02423 257 Gene3D - 72 248 IPR027417 -
Aip01g02423 257 MobiDBLite consensus disorder prediction 1 31 - -
Aip01g02423 257 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1 111 241 IPR030101 GO:0006281|GO:0031297|GO:0036310
Aip01g02423 257 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 209 IPR027417 -
Aip01g02423 257 MobiDBLite consensus disorder prediction 209 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02423 Aip-Chr1 123847050 123849917 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02423 118 203 RAD5 or RAD16-like Gene Family AT1G11100 34.884 4.75e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02423 K14440 - aip:107635950 345.895