Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02376 ATGGAGGTAGAGGATGATGACTGGGACTTGACCGCAGAAGAACTCGATTCTCTTGAACGCGACGCTTTCCAGAAAATTGCTCAACTTCGCGACTCTTCTACCCCTCCTTCTTCTCAACAACTCAATCTGCACCAACACCAACACCAACAACACCATTTTCCAAAACCACCTTCTGCCAACCATTCCCAACCCTTCCCACCAAACCCCATTTCCGATTCCCGTCCTCAAAGGGTGGACGCTTTGCCTCAAGGAGGTAGAGCATTACACCCCTCATTGAAACCAGGGACAAAAAAGGATGAACCTTCTAAAGAACTGCCGAAGTTTTCTGTCAAATTTTTTCTTCATTCCAGTGGGCATGTTGCAGCGAAATTCCAATATGACCAGGTAATAATTTCTGCTTTTCGAAGAATCCCTAAAGCTTCTTGGAATGCAAAAGAAAGGTTATGGATGTTCCCACTTTCTTCCTTGTCAGACGCAGAGAAGGTTCTAGGAGAAATATCTAATTATAAAGTTCAGGTGGAGAACTTAGATCCTTTAGTGCACCGTGCCATTGTTTCTGCATCCGCTGTTCCAGATCTTCGAGATCGTTACGACAAGATCCCTAATTACATTGAATCAAAGCTTTTACCATTTCAGAGAGAAGGTGTAAGGTATTGCCACATTATGTTGTGTTGCTTGTATAATTTTTCTTACCTTTTGCAGGCCATTGCTGTAGCTTCATGCATTCAGGAGTCATGGCCTGTTCTCATAGTTGCACCATCATCATTGCGCCTGCAATGGGCTTCTATGATTCAACAATGGCTGAATCTTCCTTCTTCAGATATACTTATCGTCTTACCTCAAAGTGGTGGATCAAATAGAGGAGGCTTCAATATAGTATCCCCAAGTGCCAAAAGCAACATTCGTTTGGATGGACTCTTCAACATTATCTCATATGATTTGGTGCCAAAGCTACAGAATATACTCACAACATTGGACTTTAAGGTTGTGATTGCAGATGAATCACACTATCTGAAGAATGCTCAGGCAAAGAGGACTACTGCAACTCTTCCAGTTATAAAGAAAGCTCAATACGCAATATTGCTTAGTGGAACTCCTGCTTTATCTCGACCAATAGAACTGTTCAAGCAGCTGGAAGCTTTGTATCCTGGCGTATATAAGAATGTTCATGAATATGGTAACCGATATTGCAAGGGTGGAGTTTTTGGAGTTTATCAAGGGGCAAGTAATCATGAAGAATTACACAATTTGATGAAGGCAACAGTGATGATACGAAGGCTTAAAAAAGATGTTCTTTCTCAACTTCCTGTAAAGCGTAGGCAACAAGTCTTCTTAGACTTAGCTGACAAGGACATGAAGCAAATTAACGCTTTATTCCGTGAGTTAGAGGTGGTAAAAGCCAAAATTAAGTCTGCCAAATCAAAAGATGAGGCTGAATCTCTTAAGTTTACTCAAAAGAATCTGATTAACAAGGTTTGCATGGAAGAAGTTCTGAACATAATCATGACTTGTACAATTTGTTTGGAAGCAGGTTGCAAGTTTCTTATATTTGCACATCATCAGCCAATGATAGATGCAATACATGAGTTCCTTCTTAGGAAAAAAGTGGGTTGCATCCGGATTGATGGAGGTACACCCGCTGCATCAAGGCAACCATTGGTTACAGATTTCCAGGAAAAGGATTCTATCAAGGCAGCTGTGTTATCCATTAAAGCTGGAGGAGTTGGATTAACTTTAACTGCTGCAAGCACAGTTATCTTTGCAGAACTATCCTGGACTCCAGGTGACCTAATTCAGGCCGAAGATCGTGCTCATCGAATTGGCCAGGTTTCTTCAGTAAATATATACTACTTGCTGGCAAATGATACGGTTGATGACATCATATGGGATGTGGTGCAATCCAAACTGGATAATTTGGGGCAGATGTTAGATGGCCATGAGAATACCTTAGCTGTGTCAAATAATCAACCATTGAGTAGCCCTGCAAAGCATACTACTGTTGAGCATAGCCCTTCAAAGCAGAGAACTCTTGACCAGTTTGTCAGAAGATGTGATAATGTGGATAGATCAGAACATCAGCCTGACCCAAAACGGCCCCGTCAGTCATGA 2109 0.4163 MEVEDDDWDLTAEELDSLERDAFQKIAQLRDSSTPPSSQQLNLHQHQHQQHHFPKPPSANHSQPFPPNPISDSRPQRVDALPQGGRALHPSLKPGTKKDEPSKELPKFSVKFFLHSSGHVAAKFQYDQVIISAFRRIPKASWNAKERLWMFPLSSLSDAEKVLGEISNYKVQVENLDPLVHRAIVSASAVPDLRDRYDKIPNYIESKLLPFQREGVRYCHIMLCCLYNFSYLLQAIAVASCIQESWPVLIVAPSSLRLQWASMIQQWLNLPSSDILIVLPQSGGSNRGGFNIVSPSAKSNIRLDGLFNIISYDLVPKLQNILTTLDFKVVIADESHYLKNAQAKRTTATLPVIKKAQYAILLSGTPALSRPIELFKQLEALYPGVYKNVHEYGNRYCKGGVFGVYQGASNHEELHNLMKATVMIRRLKKDVLSQLPVKRRQQVFLDLADKDMKQINALFRELEVVKAKIKSAKSKDEAESLKFTQKNLINKVCMEEVLNIIMTCTICLEAGCKFLIFAHHQPMIDAIHEFLLRKKVGCIRIDGGTPAASRQPLVTDFQEKDSIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIYYLLANDTVDDIIWDVVQSKLDNLGQMLDGHENTLAVSNNQPLSSPAKHTTVEHSPSKQRTLDQFVRRCDNVDRSEHQPDPKRPRQS 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02376 702 Coils Coil 455 475 - -
Aip01g02376 702 MobiDBLite consensus disorder prediction 27 57 - -
Aip01g02376 702 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 233 384 IPR014001 -
Aip01g02376 702 Pfam Helicase conserved C-terminal domain 507 608 IPR001650 -
Aip01g02376 702 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1 4 685 IPR030101 GO:0006281|GO:0031297|GO:0036310
Aip01g02376 702 CDD SF2_C_SNF 494 619 - -
Aip01g02376 702 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 685 - -
Aip01g02376 702 ProSiteProfiles HARP domain profile. 101 178 IPR010003 -
Aip01g02376 702 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 437 IPR027417 -
Aip01g02376 702 Gene3D - 481 692 IPR027417 -
Aip01g02376 702 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 499 651 IPR001650 -
Aip01g02376 702 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 326 655 IPR027417 -
Aip01g02376 702 Pfam SNF2-related domain 244 484 IPR000330 GO:0005524|GO:0140658
Aip01g02376 702 Gene3D - 183 451 IPR038718 -
Aip01g02376 702 SMART helicmild6 525 608 IPR001650 -
Aip01g02376 702 MobiDBLite consensus disorder prediction 27 103 - -
Aip01g02376 702 MobiDBLite consensus disorder prediction 655 679 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02376 Aip-Chr1 122969996 122980490 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02376 393 635 RAD5 or RAD16-like Gene Family AT1G61140 28.958 6.44e-18 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aip01g02376 SNF2_N 5.5e-22 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02376 K14440 - gmx:100778246 1050.81