Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02373 ATGGTAGTTGAGGAAAGTATAGATGGAAATATTACTTCATGTGAGGTGACAGGATCAGTAAGTCATTCACAGATTCCGAATCACGAAAATTCGCAAGAAATTAAGGGAAGGGAGGAGGCTCCAAAGAAGAACAAGGCCAAAACTGAAAGCAATAAAACAGTACCCGTTTACATGCTTTTCTCATTTGCAGATTCTTGGGATCATTTGCTTATGTTTGTTGGGACAATAAGTGCAATTGGGAATGGAATATCCAACCCTTTAATGAGTGTACTAATTGGAGATACAATTGATGCTTTTGGAAGAAATGGTAGCAATAAACAAGTTGTTGATGAAGTTTCCAAGGTCTCTCTGAAGTTTCTATGCTTGGGTATAGCTGCCTTTTTTGCAGCATTTTTGCAGGTTTCTTGTTGGGTGATCACTGGGGAGAGACAAGCTGCAAGAATAAGAGGCTTATACCTCAAAGCAATTCTGAGACAAGATGTCGGCTTCTTCGACAAGGAAACTAACACCGGCGAGGTTACTGAAAGGATGTCAGGAGACACATTTCTTGTTCAAGAAGCCATGGGGGAAAAGGTAGGACAGTTCATACAATATGTGGCAAGCTTTTTAGGAGGGCTTATCATAGCATTCATCAAGGGTTGGCTTCTAACCCTTGTCCTGCTATCTTCCCTGCCTCCTCTTGTCTTAGCTGGTTCTCTAATGACTTGCGCTTTCGCGAAGATGGCATCTCGTGGACAAGCAGCATATTCTGAAGCAGCAACTATATTTGACAGGACTATTGGTTCAATTAGAACTGTTGCATCCTTTACTGGTGAGGATCAAGCTATAGCTTTATACAATGAATCCTTAACCAAAGCATATAGGAGTGGTGTGCAAGAAGGAGTGGCTGCTGGTTTAGGCCTTGGTTTGCTTCGATTGCTCGCCTTCAGCAGTTATGCTTTGGGTGTATGGTATGGAGGGAAGATGGTTCTAGAGAAAGGATATACAGGAGGTGAAGTCATGAGTGTGTTTTTTGCAGTATTGATTGGATCATTGTCTCTGGGGCATGCATCTCCAAGCTTAACTGCAATTGCTGCAGGACAAGCCGCGGCCTATAAAATGTTTGAAACAATAAAGAGACAGCCAGATATTGATTCTTATGACACGGCTGGTCGGAAGCTAGATGATATTTCCGGAGATATAGAACTTAGAGAGGTTTGCTTTAGTTATCCAACAAGACCAGATGAACTCATATTCAATGGATTTTCCATTTCAATATCAAGTGGCACTACTGCAGCTTTGGTAGGACAAAGTGGGAGTGGGAAATCAACAGTTGTTAGTTTGATAGAGAGATTTTATGATCCACAGGCTGGTGAAGTTCTCATTGATGGTATCAACCTCAGAGAATTTCAACTGAAATGGCTCAGACAGAAGATAGGCCTAGTTAGCCAGGAGCCGGTTCTGTTTTTGTGTAGCATTAAAGAGAATATTGCATATGGTAAGGATGGTGCAACAGATGAAGAAATCATAGCTGCAGCAGAACTTGCTAATGCTGCTAGATTCATAGATAAATTTCCTCATGGACTCGACACGATGGTTGGTGAGCATGGAACTCAGCTTTCTGGAGGACAAAAGCAAAGGATTGCTATAGCAAGAGCAATTCTGAAAGATCCTAGAATCTTGTTACTTGATGAAGCTACAAGTGCCCTTGATGCTGAATCTGAGAGAGTGGTTCAAGAGACACTAGATAGAATAATGGTTAACAGAACAACTGTTATTGTAGCGCATCGCTTAATCACAATAAGAAATGCTGACACAATTGCTGTTATTCATCAAGGAAAAGTTGTAGAAAAAGGTTCACATGATGAGCTCATTAAGGATCCTAATGGAGCTTTTAGCCAGCTTATTAGACTCCAAGAAATAAAAAAGGAGACAGAACAGAATGATGAATGCTCTGCAGATTCTGGACGGCAATCAAGCCGAGGATCATCCGAAATTGGGAACAGCAATCATCACTCATTCAGAATAACAGATGCTATGACATCAGAAGGAGGACCTCAAGTTCTTCCTTCAGCAGCATTATCACCTACACCTCCAGAAGTTCCATTTTTCAGGCTTGCTTGTCTTAACAAGCCTGAAATCCCAGTTTTACTCTTAGGGACATTGGTAGCAGTTATATGTGGGACTATTACACCTGCTCTGGGGCTTGTAGTATCTAAAATGATAAACACTTTCTTTGAACCTGCGGATAAACTCCGCAAAGATTCAAAGCATTGGGCATTAGTATTTGTTGCTTTCAGTGTGGCTGCATTCATATTTCATCCATTGAGGTCCTACTTCTTTTCTGTGGCTGGTTCTAAGTTGATAAAAAGGATTCGGCTTATGTGTTTTGATAAAATAATTCACATGGAAGTAGGATGGTTTGATAAAGCTGAGAATTCAAGTGGAGCCCTTGGAGCAAGGTTGTCAATTGATGCTGCTTCGCTTCGCGCTTTGTTTGGGGATGCACTTGGTATGTTGGTTCAAGATGCTTCCACTGCACTTACAGCCTTGGTGATTGCGTTCGAGGCGAATTGGCAGCTAGCTCTCATTATCCTTGCTATGATGCCTCTTCTGTTGTTAAATGGACATTTACAAATCAGATCCATGAGAGGATTTAGTGCAAATGCAAAGAAACAATATGAGGAAGCAAGTCAAGTAGCAAACGATGCAGTAGGGAATATCAGAACAGTTGCTTCTTTCTGTGCTGAAGAGAAGGTAATGGAGTTATATCAGAAGAAATGTGAAGGACCAATGCAAACAGGCATAAGGCAAGGTTTAGTGAGTGGAAGTGGTTATGGCCTATCAATCTTCTTTCTGTTCTGTGTCTACGGATGCAGTTTCTACGCCGGTGCCAGGCTTGTTAAGGATGGCAAAACAACAATGTCAGAAGTTTTCCGCGTATTTTTTTGTCTCACAATGACTGCTATAGCATTATCTCAGTCCAGCCTACTCGCCCCGGGCGCAAGCAAAGCAAAAAGTTCAGCTGCTTCTGTGTTTGCCATTCTTGATCAGAAATCAAAAGTAGACTCCAGTGATAAGTCTGGAATCACATTGCAAGATGTGAAGGGAGAGATTAAATTCAACCATGTCACTTTCAAGTATCCAACTAGGCCTAATGTTCATATATTCACAGATCTTTCCTTAACCATTCATTCAGGACAGACAGTGGCACTAGTTGGAGAAAGTGGGAGTGGAAAGTCAACAGTAATATCATTGCTGCAAAGATTTTATGAACCAGATTCAGGTGAGATAACTCTAGATGGAACAGAAATCAAGAAGCTACAACTGAAATGGTTTAGGGAGCAAATGGGGCTAGTAAGCCAGGAGCCTGTGTTGTTCAATGACACCATTAGATCCAACATTGCATATGGAAAGGGAGGGAATGCAACAGAAGCAGAAATTGTTGCTGCTGCACAACTTGCTAATGCTCACAAATTCATTAGCAGTTTGCACAAGGGTTATGAGACAATAGTAGGAGAGAGAGGGATTCAACTATCAGGGGGTCAGAAGCAAAGGGTGGCAATAGCAAGAGCCATAGTGAAGAGTCCAAAGATATTGCTTCTAGATGAAGCAACAAGTGCACTTGATGCTGAGTCAGAAAAGGTGGTTCAGGATGCACTTGACAGGGTTATGGTAAACAGAACCACCATTGTGGTGGCACATAGGTTATCAACCATTAAGGGTGCACATTTAATTGCTGTGGTTAAAAATGGTGTCATTGCTGAGAAAGGCACACATGATGCTTTGCTCAAAAAGGGTGGCACCTATGCTTCCTTAGTAGCATTCTTCTCAAGTTCTAGTTCATCTTAA 3831 0.4161 MVVEESIDGNITSCEVTGSVSHSQIPNHENSQEIKGREEAPKKNKAKTESNKTVPVYMLFSFADSWDHLLMFVGTISAIGNGISNPLMSVLIGDTIDAFGRNGSNKQVVDEVSKVSLKFLCLGIAAFFAAFLQVSCWVITGERQAARIRGLYLKAILRQDVGFFDKETNTGEVTERMSGDTFLVQEAMGEKVGQFIQYVASFLGGLIIAFIKGWLLTLVLLSSLPPLVLAGSLMTCAFAKMASRGQAAYSEAATIFDRTIGSIRTVASFTGEDQAIALYNESLTKAYRSGVQEGVAAGLGLGLLRLLAFSSYALGVWYGGKMVLEKGYTGGEVMSVFFAVLIGSLSLGHASPSLTAIAAGQAAAYKMFETIKRQPDIDSYDTAGRKLDDISGDIELREVCFSYPTRPDELIFNGFSISISSGTTAALVGQSGSGKSTVVSLIERFYDPQAGEVLIDGINLREFQLKWLRQKIGLVSQEPVLFLCSIKENIAYGKDGATDEEIIAAAELANAARFIDKFPHGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQETLDRIMVNRTTVIVAHRLITIRNADTIAVIHQGKVVEKGSHDELIKDPNGAFSQLIRLQEIKKETEQNDECSADSGRQSSRGSSEIGNSNHHSFRITDAMTSEGGPQVLPSAALSPTPPEVPFFRLACLNKPEIPVLLLGTLVAVICGTITPALGLVVSKMINTFFEPADKLRKDSKHWALVFVAFSVAAFIFHPLRSYFFSVAGSKLIKRIRLMCFDKIIHMEVGWFDKAENSSGALGARLSIDAASLRALFGDALGMLVQDASTALTALVIAFEANWQLALIILAMMPLLLLNGHLQIRSMRGFSANAKKQYEEASQVANDAVGNIRTVASFCAEEKVMELYQKKCEGPMQTGIRQGLVSGSGYGLSIFFLFCVYGCSFYAGARLVKDGKTTMSEVFRVFFCLTMTAIALSQSSLLAPGASKAKSSAASVFAILDQKSKVDSSDKSGITLQDVKGEIKFNHVTFKYPTRPNVHIFTDLSLTIHSGQTVALVGESGSGKSTVISLLQRFYEPDSGEITLDGTEIKKLQLKWFREQMGLVSQEPVLFNDTIRSNIAYGKGGNATEAEIVAAAQLANAHKFISSLHKGYETIVGERGIQLSGGQKQRVAIARAIVKSPKILLLDEATSALDAESEKVVQDALDRVMVNRTTIVVAHRLSTIKGAHLIAVVKNGVIAEKGTHDALLKKGGTYASLVAFFSSSSSS 1276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02373 1276 Pfam ABC transporter transmembrane region 710 982 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip01g02373 1276 Pfam ABC transporter transmembrane region 71 345 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip01g02373 1276 MobiDBLite consensus disorder prediction 637 664 - -
Aip01g02373 1276 Gene3D ABC transporter type 1, transmembrane domain 58 1002 IPR036640 GO:0005524|GO:0016021
Aip01g02373 1276 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1021 1268 IPR027417 -
Aip01g02373 1276 MobiDBLite consensus disorder prediction 18 48 - -
Aip01g02373 1276 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 394 630 IPR003439 GO:0005524
Aip01g02373 1276 ProSitePatterns ABC transporters family signature. 1172 1186 IPR017871 GO:0005524
Aip01g02373 1276 SMART AAA_5 421 607 IPR003593 -
Aip01g02373 1276 SMART AAA_5 1059 1252 IPR003593 -
Aip01g02373 1276 CDD ABC_6TM_Pgp_ABCB1_D1_like 71 355 - -
Aip01g02373 1276 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 711 997 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip01g02373 1276 SUPERFAMILY ABC transporter transmembrane region 59 378 IPR036640 GO:0005524|GO:0016021
Aip01g02373 1276 Gene3D - 1022 1273 IPR027417 -
Aip01g02373 1276 CDD ABC_MTABC3_MDL1_MDL2 1032 1267 - -
Aip01g02373 1276 ProSitePatterns ABC transporters family signature. 533 547 IPR017871 GO:0005524
Aip01g02373 1276 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 72 359 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip01g02373 1276 PANTHER - 27 1270 - -
Aip01g02373 1276 Gene3D - 384 633 IPR027417 -
Aip01g02373 1276 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 27 1270 - -
Aip01g02373 1276 MobiDBLite consensus disorder prediction 645 664 - -
Aip01g02373 1276 CDD ABC_6TM_Pgp_ABCB1_D2_like 702 1015 - -
Aip01g02373 1276 SUPERFAMILY ABC transporter transmembrane region 698 1012 IPR036640 GO:0005524|GO:0016021
Aip01g02373 1276 CDD ABC_MTABC3_MDL1_MDL2 394 632 - -
Aip01g02373 1276 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1032 1269 IPR003439 GO:0005524
Aip01g02373 1276 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 387 632 IPR027417 -
Aip01g02373 1276 Pfam ABC transporter 1051 1200 IPR003439 GO:0005524
Aip01g02373 1276 Pfam ABC transporter 413 561 IPR003439 GO:0005524
Aip01g02373 1276 MobiDBLite consensus disorder prediction 31 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02373 Aip-Chr1 122939251 122945298 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02373 39 1267 Calmodulin-binding Proteins AT2G36910 44.400 0.0 1047
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02373 K05658 - gmx:100777713 1831.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02373 01 122939251 122945298 Aip01g02373 01 122939251 122945298 ECH