Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aip01g02372 | ATGAAAATGGAAGGTAATGATACTGCGAGTTCTTCGAAAGTAGCAGGCCCTGAGATGAAGCAAGATCCAAAGAAGGGAAAGGAGAAAGATGAAGGAAAAGACACAGTGCCATTGTACAAGCTTTTCTCATTTGCTGATCGGTTAGATCGTTTGTTGATGCTTGTTGGAACAGTTGGTGCTATTGGTAATGGAATCTCCATGCCATTAATGACTCTAATATTTGGGAATATGATCAATGCATTTGGAGGAAACTCAAACACCAAAGAAGTTGTTGATGAAGTTTCCAGGGTGTCACTGAAATTTGTGTACTTGGCTGTGGGAACCTTTTTCGCATCACTCATGCAGGTGGCTTGTTGGATGGTTACTGGGGAGAGACAGGCAGCACGAATCAGAGGCTTATACCTTCAAACAATCTTGAGGCAAGATGTTAGCTTCTTCGACAAGGAAACGAATACCGGCGAGGTTGTTGGAAGGATGTCCGGCGATACTGTTCTTATTCAAGACGCCATGGGAGAGAAGGTAGGGCAGTTTATACAGTTGATGGCAACATTCGTTGGAGGTTTTATCATAGCATTTGTCAGAGGATGGCTTCTATCAGTTGTCATGCTGTCTTCTATTCCACTTCTTGTGGTGTCTGGTGCTGCAATGACCATGGTTATTCAAAAAACATCTTCTCGCGGACAAACAGCTTATTCTGCTGCAGCAAGCGTAGTAGAGCAGACTATAGGCTCCATTCGAACGGTTGCATCATTCACTGGGGAGAAACAAGCTGTAATTAAGTATAATCAGTCACTAATCAAAGCTTACAAGACCGGTTTGCAAGAGGCCCTGGCTTCTGGTTTCGGTTTTGGCGTACTGTATTTTGTTATTATTTCTACTTATGGTTTGGCTATATGGTATGGCGCCAAAATGGTAATCGAGAAAGGATATAATGGAGGCGAGGTTATCACTGTAATCTTTGCTCTATTGACCGGATCCATGTCTCTTGGTCAGGCATCGCCGAGCCTAAGCGCGTTTGCTGCAGGGCAAGCGGCGGCGTTTAAGATGTTTGAAACAATTAAAAGGAAGCCGGAAATCGATGCTTCTGATCCCAACGGTCTAAAGCTCGACAACATTCGTGGAGACATAGAGCTTAGGGAGGTCTGCTTTAGTTATCCTACAAGGCCGGATGAACTGATATTCAATGGATTTTCGCTTTCAATACCGAGTGGAACTACTGCAGCTCTGGTGGGGCAAAGCGGGAGTGGGAAATCAACGGTTGTTAGTTTGATTGAGAGATTCTATGATCCACAAGCCGGTGAAGTTCTCATTGATGGTATCAACCTCAAAGAATTTCAGCTGAAGTGGATCAGGCAGAAAATTGGCCTAGTTAGCCAGGAACCAGTTCTCTTTGCTAGTAGCATTAAAGAGAACATTGCTTATGGAAAAGACGGTGCAACCGATGAAGAAATCCGAGCCGCAGCAGAACTCGCCAATGCTGCAAAATTCATAGACAAGCTTCCTCAGGGATTGGATACAATGGTTGGTGAGCATGGAACTCAGCTCTCTGGAGGACAAAAGCAGAGAGTTGCAATAGCAAGAGCGATTTTGAAAGATCCAAGAATCTTACTTCTTGATGAAGCTACAAGTGCGCTTGATGCCGAATCTGAGAGGATAGTACAGGAGGCATTGGACAGAATAATGGTAAACCGAACAACTGTCATTGTCGCGCATCGTCTAAGTACTATAAGAAACGCTGATGCAATTGCTGTTATTCATCAAGGAAAAATAGTAGAAAGAGGTTCGCATGCTGAGCTCACGCGTGATCCTGAGGGGGCCTATAGCCAGTTAATTAGGCTGCAAGAAGTTAAAGGCGCAAATCACAAAGACAAACCAGAAAGTATTTTGCATTCTGGAAGAATCTCGAGTCATCGATCTTCTTCTATAAGATCTCTAAGCCATCAAGAATCATTCGGAATTGGAAACAGCGGCCGCCACTCATTCACAGCACCGTTTCCGGTTCCTACAGCAGTTGGCCTCACGGAATCGCCACCCGAAGCTCCTACTTCTTCAACTGTCTCACCTTCGCCACCGGAAGTTCCTCTTCTTCGCCTCGCTTCTCTAAACAAGCCTGAGATTCCAGTCTTATTCATGGGATCAGTAGCTGCAGTGATAAGTGGATTGATATTTCCAGCTTTCGGCCTAGTGCTTTCGAAAATGATCACAATTTTCTACGAACCGGCTCATAAGCTTCGCCACGATTCTCGAATTTGGGCACTGGTGTTTGTTGGACTTGGAGCACTATCATTGTTTGTGTACCCTTCTAGATTCTACCTTTTCGCCGTCGCCGGTGGTAAGTTGATCAAGAGGATCCGGGAGATGTGTTTCGAGAAAGTGGTCAATATGGAGGTGAGCTGGTTCGACGAAGCTGATCATTCAAGCGGAGCGATTGGTGCTAGGCTTGCTACTGATGCTGCTTCGATCCGAGCTATAGTCGGGGATGCACTTGGATTGATGGTTGAAAACATTGCTACAGCAGTTTCTGCCTTGGTGATTTCTTTTGATGCCTGCTGGCAACTTGCTCTTATAGTTCTCGCTTTGGCGCCTCTGTTGGGGCTAAATGGATATGTGCAGTTCAAGTTCTTGGCAGGATTCAGCTCTGATGCAAAGAAATTGTATGAGGAAGCAAGTCAAGTGGCAAATGATGCTGTAGGGAGTATTAGAACAGTTGCTTCCTTCTGTGCTGAAGAGAAGGTGATGGACTTATACCGCGAAAAATGCGAAGGACCGATCAAGACAGGGATAAGAAAGGGAATAATCAGTGGTATAGGTTTTGGAGTATCATTCTTCATGATGTATTGTGTTTATGCAACTAGCTTCTATGCCGGAGCTCGTCTCGTGGATGATGGAAAATCAACATTCTCAGATGTCTTCAGAGTCTTCTTTGCTCTCAGCATGGCAGCTATTGGAATCTCTCAATCCAGCTCCTTAGTCCCTGACTCAACCAAAGCGAAAAGCGCTGCAGCATCTATATTCGCCATTCTTGATCGAAAGTCGCGAATAGACCCCAGTGAGGAATCTGGATTAACACATGAAGTTAAGGGAGAAATTGAGCTTCACCATGTCAGTTTCAAGTATCCAACTAGGCCTGATGTTCAAATATTCTGCAATCTTAGCTTGACAATTCGTAGTGGCAAGACAGTTGCACTGGTTGGAGAAAGTGGAAGTGGAAAGTCAACAGTGATAGCATTGCTACAAAGATTTTATGACCCTGATTCAGGTCACATTACACTTGATGGAAAGGATATCCAAACATTTCAAGTTAAGTGGCTAAGACAACAGATGGGTTTGGTTAGCCAAGAGCCTGTTTTGTTCAACGACACGATCCGAGCCAACATCGCATATGGAAAAGGAGGAGATGCAACAGAAGCAGAAATCATAGGTGCAGCAGAACTTGCTAATGCTCACAAGTTCATTAGTAGTTTGCAGCAGGGTTATGACACGATAGTAGGCGAGCGTGGCGTCCAATTATCCGGTGGCCAGAAGCAGCGAGTGGCGATTGCAAGAGCCATAGTTAAGAATCCCAAGATATTGCTTCTAGATGAAGCAACAAGTGCACTTGATGCTGAGTCTGAGAAAGTGGTTCAGGATGCACTTGACAGGGTTATGGTGGACAGAACCACCATTGTGGTGGCACATAGGCTATCTACAATCAAAGGTGCTGACTTGATTGCAGTAGTTAAGAATGGTGCTATTGCAGAGAAGGGTAAGCATGAAGCTTTGCTCAATAAGGGAGGTGACTATGCTTCATTGGTAGCATTGCACACAAGTGCTTCATCTTAG | 3822 | 0.4477 | MKMEGNDTASSSKVAGPEMKQDPKKGKEKDEGKDTVPLYKLFSFADRLDRLLMLVGTVGAIGNGISMPLMTLIFGNMINAFGGNSNTKEVVDEVSRVSLKFVYLAVGTFFASLMQVACWMVTGERQAARIRGLYLQTILRQDVSFFDKETNTGEVVGRMSGDTVLIQDAMGEKVGQFIQLMATFVGGFIIAFVRGWLLSVVMLSSIPLLVVSGAAMTMVIQKTSSRGQTAYSAAASVVEQTIGSIRTVASFTGEKQAVIKYNQSLIKAYKTGLQEALASGFGFGVLYFVIISTYGLAIWYGAKMVIEKGYNGGEVITVIFALLTGSMSLGQASPSLSAFAAGQAAAFKMFETIKRKPEIDASDPNGLKLDNIRGDIELREVCFSYPTRPDELIFNGFSLSIPSGTTAALVGQSGSGKSTVVSLIERFYDPQAGEVLIDGINLKEFQLKWIRQKIGLVSQEPVLFASSIKENIAYGKDGATDEEIRAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMVNRTTVIVAHRLSTIRNADAIAVIHQGKIVERGSHAELTRDPEGAYSQLIRLQEVKGANHKDKPESILHSGRISSHRSSSIRSLSHQESFGIGNSGRHSFTAPFPVPTAVGLTESPPEAPTSSTVSPSPPEVPLLRLASLNKPEIPVLFMGSVAAVISGLIFPAFGLVLSKMITIFYEPAHKLRHDSRIWALVFVGLGALSLFVYPSRFYLFAVAGGKLIKRIREMCFEKVVNMEVSWFDEADHSSGAIGARLATDAASIRAIVGDALGLMVENIATAVSALVISFDACWQLALIVLALAPLLGLNGYVQFKFLAGFSSDAKKLYEEASQVANDAVGSIRTVASFCAEEKVMDLYREKCEGPIKTGIRKGIISGIGFGVSFFMMYCVYATSFYAGARLVDDGKSTFSDVFRVFFALSMAAIGISQSSSLVPDSTKAKSAAASIFAILDRKSRIDPSEESGLTHEVKGEIELHHVSFKYPTRPDVQIFCNLSLTIRSGKTVALVGESGSGKSTVIALLQRFYDPDSGHITLDGKDIQTFQVKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIIGAAELANAHKFISSLQQGYDTIVGERGVQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALDRVMVDRTTIVVAHRLSTIKGADLIAVVKNGAIAEKGKHEALLNKGGDYASLVALHTSASS | 1273 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aip01g02372 | 1273 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 53 | 337 | - | - | |
Aip01g02372 | 1273 | SUPERFAMILY | ABC transporter transmembrane region | 697 | 1011 | IPR036640 | GO:0005524|GO:0016021 | |
Aip01g02372 | 1273 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 365 | 614 | IPR027417 | - | |
Aip01g02372 | 1273 | Gene3D | ABC transporter type 1, transmembrane domain | 99 | 1005 | IPR036640 | GO:0005524|GO:0016021 | |
Aip01g02372 | 1273 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Aip01g02372 | 1273 | Pfam | ABC transporter transmembrane region | 709 | 979 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Aip01g02372 | 1273 | Pfam | ABC transporter transmembrane region | 53 | 327 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Aip01g02372 | 1273 | ProSitePatterns | ABC transporters family signature. | 1170 | 1184 | IPR017871 | GO:0005524 | |
Aip01g02372 | 1273 | MobiDBLite | consensus disorder prediction | 18 | 32 | - | - | |
Aip01g02372 | 1273 | CDD | ABC_MTABC3_MDL1_MDL2 | 376 | 614 | - | - | |
Aip01g02372 | 1273 | SMART | AAA_5 | 1057 | 1244 | IPR003593 | - | |
Aip01g02372 | 1273 | SMART | AAA_5 | 403 | 596 | IPR003593 | - | |
Aip01g02372 | 1273 | PANTHER | - | 21 | 1270 | - | - | |
Aip01g02372 | 1273 | MobiDBLite | consensus disorder prediction | 672 | 691 | - | - | |
Aip01g02372 | 1273 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 710 | 996 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Aip01g02372 | 1273 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 376 | 612 | IPR003439 | GO:0005524 | |
Aip01g02372 | 1273 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
Aip01g02372 | 1273 | PANTHER | ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL | 21 | 1270 | - | - | |
Aip01g02372 | 1273 | ProSitePatterns | ABC transporters family signature. | 515 | 529 | IPR017871 | GO:0005524 | |
Aip01g02372 | 1273 | CDD | ABC_MTABC3_MDL1_MDL2 | 1030 | 1265 | - | - | |
Aip01g02372 | 1273 | Pfam | ABC transporter | 395 | 543 | IPR003439 | GO:0005524 | |
Aip01g02372 | 1273 | Pfam | ABC transporter | 1050 | 1198 | IPR003439 | GO:0005524 | |
Aip01g02372 | 1273 | Gene3D | - | 374 | 633 | IPR027417 | - | |
Aip01g02372 | 1273 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1030 | 1267 | IPR003439 | GO:0005524 | |
Aip01g02372 | 1273 | Gene3D | - | 1021 | 1272 | IPR027417 | - | |
Aip01g02372 | 1273 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1023 | 1267 | IPR027417 | - | |
Aip01g02372 | 1273 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 54 | 341 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Aip01g02372 | 1273 | SUPERFAMILY | ABC transporter transmembrane region | 40 | 360 | IPR036640 | GO:0005524|GO:0016021 | |
Aip01g02372 | 1273 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 699 | 1014 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aip01g02372 | Aip-Chr1 | 122929718 | 122935420 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aip01g02372 | 21 | 1268 | Calmodulin-binding Proteins | AT2G36910 | 45.886 | 0.0 | 1083 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aip01g02372 | K05658 | - | gmx:100776122 | 1969.51 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Aip01g02372 | 01 | 122929718 | 122935420 | Aip01g02372 | 01 | 122929718 | 122935420 | ECH |