Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02372 ATGAAAATGGAAGGTAATGATACTGCGAGTTCTTCGAAAGTAGCAGGCCCTGAGATGAAGCAAGATCCAAAGAAGGGAAAGGAGAAAGATGAAGGAAAAGACACAGTGCCATTGTACAAGCTTTTCTCATTTGCTGATCGGTTAGATCGTTTGTTGATGCTTGTTGGAACAGTTGGTGCTATTGGTAATGGAATCTCCATGCCATTAATGACTCTAATATTTGGGAATATGATCAATGCATTTGGAGGAAACTCAAACACCAAAGAAGTTGTTGATGAAGTTTCCAGGGTGTCACTGAAATTTGTGTACTTGGCTGTGGGAACCTTTTTCGCATCACTCATGCAGGTGGCTTGTTGGATGGTTACTGGGGAGAGACAGGCAGCACGAATCAGAGGCTTATACCTTCAAACAATCTTGAGGCAAGATGTTAGCTTCTTCGACAAGGAAACGAATACCGGCGAGGTTGTTGGAAGGATGTCCGGCGATACTGTTCTTATTCAAGACGCCATGGGAGAGAAGGTAGGGCAGTTTATACAGTTGATGGCAACATTCGTTGGAGGTTTTATCATAGCATTTGTCAGAGGATGGCTTCTATCAGTTGTCATGCTGTCTTCTATTCCACTTCTTGTGGTGTCTGGTGCTGCAATGACCATGGTTATTCAAAAAACATCTTCTCGCGGACAAACAGCTTATTCTGCTGCAGCAAGCGTAGTAGAGCAGACTATAGGCTCCATTCGAACGGTTGCATCATTCACTGGGGAGAAACAAGCTGTAATTAAGTATAATCAGTCACTAATCAAAGCTTACAAGACCGGTTTGCAAGAGGCCCTGGCTTCTGGTTTCGGTTTTGGCGTACTGTATTTTGTTATTATTTCTACTTATGGTTTGGCTATATGGTATGGCGCCAAAATGGTAATCGAGAAAGGATATAATGGAGGCGAGGTTATCACTGTAATCTTTGCTCTATTGACCGGATCCATGTCTCTTGGTCAGGCATCGCCGAGCCTAAGCGCGTTTGCTGCAGGGCAAGCGGCGGCGTTTAAGATGTTTGAAACAATTAAAAGGAAGCCGGAAATCGATGCTTCTGATCCCAACGGTCTAAAGCTCGACAACATTCGTGGAGACATAGAGCTTAGGGAGGTCTGCTTTAGTTATCCTACAAGGCCGGATGAACTGATATTCAATGGATTTTCGCTTTCAATACCGAGTGGAACTACTGCAGCTCTGGTGGGGCAAAGCGGGAGTGGGAAATCAACGGTTGTTAGTTTGATTGAGAGATTCTATGATCCACAAGCCGGTGAAGTTCTCATTGATGGTATCAACCTCAAAGAATTTCAGCTGAAGTGGATCAGGCAGAAAATTGGCCTAGTTAGCCAGGAACCAGTTCTCTTTGCTAGTAGCATTAAAGAGAACATTGCTTATGGAAAAGACGGTGCAACCGATGAAGAAATCCGAGCCGCAGCAGAACTCGCCAATGCTGCAAAATTCATAGACAAGCTTCCTCAGGGATTGGATACAATGGTTGGTGAGCATGGAACTCAGCTCTCTGGAGGACAAAAGCAGAGAGTTGCAATAGCAAGAGCGATTTTGAAAGATCCAAGAATCTTACTTCTTGATGAAGCTACAAGTGCGCTTGATGCCGAATCTGAGAGGATAGTACAGGAGGCATTGGACAGAATAATGGTAAACCGAACAACTGTCATTGTCGCGCATCGTCTAAGTACTATAAGAAACGCTGATGCAATTGCTGTTATTCATCAAGGAAAAATAGTAGAAAGAGGTTCGCATGCTGAGCTCACGCGTGATCCTGAGGGGGCCTATAGCCAGTTAATTAGGCTGCAAGAAGTTAAAGGCGCAAATCACAAAGACAAACCAGAAAGTATTTTGCATTCTGGAAGAATCTCGAGTCATCGATCTTCTTCTATAAGATCTCTAAGCCATCAAGAATCATTCGGAATTGGAAACAGCGGCCGCCACTCATTCACAGCACCGTTTCCGGTTCCTACAGCAGTTGGCCTCACGGAATCGCCACCCGAAGCTCCTACTTCTTCAACTGTCTCACCTTCGCCACCGGAAGTTCCTCTTCTTCGCCTCGCTTCTCTAAACAAGCCTGAGATTCCAGTCTTATTCATGGGATCAGTAGCTGCAGTGATAAGTGGATTGATATTTCCAGCTTTCGGCCTAGTGCTTTCGAAAATGATCACAATTTTCTACGAACCGGCTCATAAGCTTCGCCACGATTCTCGAATTTGGGCACTGGTGTTTGTTGGACTTGGAGCACTATCATTGTTTGTGTACCCTTCTAGATTCTACCTTTTCGCCGTCGCCGGTGGTAAGTTGATCAAGAGGATCCGGGAGATGTGTTTCGAGAAAGTGGTCAATATGGAGGTGAGCTGGTTCGACGAAGCTGATCATTCAAGCGGAGCGATTGGTGCTAGGCTTGCTACTGATGCTGCTTCGATCCGAGCTATAGTCGGGGATGCACTTGGATTGATGGTTGAAAACATTGCTACAGCAGTTTCTGCCTTGGTGATTTCTTTTGATGCCTGCTGGCAACTTGCTCTTATAGTTCTCGCTTTGGCGCCTCTGTTGGGGCTAAATGGATATGTGCAGTTCAAGTTCTTGGCAGGATTCAGCTCTGATGCAAAGAAATTGTATGAGGAAGCAAGTCAAGTGGCAAATGATGCTGTAGGGAGTATTAGAACAGTTGCTTCCTTCTGTGCTGAAGAGAAGGTGATGGACTTATACCGCGAAAAATGCGAAGGACCGATCAAGACAGGGATAAGAAAGGGAATAATCAGTGGTATAGGTTTTGGAGTATCATTCTTCATGATGTATTGTGTTTATGCAACTAGCTTCTATGCCGGAGCTCGTCTCGTGGATGATGGAAAATCAACATTCTCAGATGTCTTCAGAGTCTTCTTTGCTCTCAGCATGGCAGCTATTGGAATCTCTCAATCCAGCTCCTTAGTCCCTGACTCAACCAAAGCGAAAAGCGCTGCAGCATCTATATTCGCCATTCTTGATCGAAAGTCGCGAATAGACCCCAGTGAGGAATCTGGATTAACACATGAAGTTAAGGGAGAAATTGAGCTTCACCATGTCAGTTTCAAGTATCCAACTAGGCCTGATGTTCAAATATTCTGCAATCTTAGCTTGACAATTCGTAGTGGCAAGACAGTTGCACTGGTTGGAGAAAGTGGAAGTGGAAAGTCAACAGTGATAGCATTGCTACAAAGATTTTATGACCCTGATTCAGGTCACATTACACTTGATGGAAAGGATATCCAAACATTTCAAGTTAAGTGGCTAAGACAACAGATGGGTTTGGTTAGCCAAGAGCCTGTTTTGTTCAACGACACGATCCGAGCCAACATCGCATATGGAAAAGGAGGAGATGCAACAGAAGCAGAAATCATAGGTGCAGCAGAACTTGCTAATGCTCACAAGTTCATTAGTAGTTTGCAGCAGGGTTATGACACGATAGTAGGCGAGCGTGGCGTCCAATTATCCGGTGGCCAGAAGCAGCGAGTGGCGATTGCAAGAGCCATAGTTAAGAATCCCAAGATATTGCTTCTAGATGAAGCAACAAGTGCACTTGATGCTGAGTCTGAGAAAGTGGTTCAGGATGCACTTGACAGGGTTATGGTGGACAGAACCACCATTGTGGTGGCACATAGGCTATCTACAATCAAAGGTGCTGACTTGATTGCAGTAGTTAAGAATGGTGCTATTGCAGAGAAGGGTAAGCATGAAGCTTTGCTCAATAAGGGAGGTGACTATGCTTCATTGGTAGCATTGCACACAAGTGCTTCATCTTAG 3822 0.4477 MKMEGNDTASSSKVAGPEMKQDPKKGKEKDEGKDTVPLYKLFSFADRLDRLLMLVGTVGAIGNGISMPLMTLIFGNMINAFGGNSNTKEVVDEVSRVSLKFVYLAVGTFFASLMQVACWMVTGERQAARIRGLYLQTILRQDVSFFDKETNTGEVVGRMSGDTVLIQDAMGEKVGQFIQLMATFVGGFIIAFVRGWLLSVVMLSSIPLLVVSGAAMTMVIQKTSSRGQTAYSAAASVVEQTIGSIRTVASFTGEKQAVIKYNQSLIKAYKTGLQEALASGFGFGVLYFVIISTYGLAIWYGAKMVIEKGYNGGEVITVIFALLTGSMSLGQASPSLSAFAAGQAAAFKMFETIKRKPEIDASDPNGLKLDNIRGDIELREVCFSYPTRPDELIFNGFSLSIPSGTTAALVGQSGSGKSTVVSLIERFYDPQAGEVLIDGINLKEFQLKWIRQKIGLVSQEPVLFASSIKENIAYGKDGATDEEIRAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMVNRTTVIVAHRLSTIRNADAIAVIHQGKIVERGSHAELTRDPEGAYSQLIRLQEVKGANHKDKPESILHSGRISSHRSSSIRSLSHQESFGIGNSGRHSFTAPFPVPTAVGLTESPPEAPTSSTVSPSPPEVPLLRLASLNKPEIPVLFMGSVAAVISGLIFPAFGLVLSKMITIFYEPAHKLRHDSRIWALVFVGLGALSLFVYPSRFYLFAVAGGKLIKRIREMCFEKVVNMEVSWFDEADHSSGAIGARLATDAASIRAIVGDALGLMVENIATAVSALVISFDACWQLALIVLALAPLLGLNGYVQFKFLAGFSSDAKKLYEEASQVANDAVGSIRTVASFCAEEKVMDLYREKCEGPIKTGIRKGIISGIGFGVSFFMMYCVYATSFYAGARLVDDGKSTFSDVFRVFFALSMAAIGISQSSSLVPDSTKAKSAAASIFAILDRKSRIDPSEESGLTHEVKGEIELHHVSFKYPTRPDVQIFCNLSLTIRSGKTVALVGESGSGKSTVIALLQRFYDPDSGHITLDGKDIQTFQVKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIIGAAELANAHKFISSLQQGYDTIVGERGVQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALDRVMVDRTTIVVAHRLSTIKGADLIAVVKNGAIAEKGKHEALLNKGGDYASLVALHTSASS 1273
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02372 1273 CDD ABC_6TM_Pgp_ABCB1_D1_like 53 337 - -
Aip01g02372 1273 SUPERFAMILY ABC transporter transmembrane region 697 1011 IPR036640 GO:0005524|GO:0016021
Aip01g02372 1273 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 365 614 IPR027417 -
Aip01g02372 1273 Gene3D ABC transporter type 1, transmembrane domain 99 1005 IPR036640 GO:0005524|GO:0016021
Aip01g02372 1273 MobiDBLite consensus disorder prediction 1 32 - -
Aip01g02372 1273 Pfam ABC transporter transmembrane region 709 979 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip01g02372 1273 Pfam ABC transporter transmembrane region 53 327 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip01g02372 1273 ProSitePatterns ABC transporters family signature. 1170 1184 IPR017871 GO:0005524
Aip01g02372 1273 MobiDBLite consensus disorder prediction 18 32 - -
Aip01g02372 1273 CDD ABC_MTABC3_MDL1_MDL2 376 614 - -
Aip01g02372 1273 SMART AAA_5 1057 1244 IPR003593 -
Aip01g02372 1273 SMART AAA_5 403 596 IPR003593 -
Aip01g02372 1273 PANTHER - 21 1270 - -
Aip01g02372 1273 MobiDBLite consensus disorder prediction 672 691 - -
Aip01g02372 1273 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 710 996 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip01g02372 1273 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 376 612 IPR003439 GO:0005524
Aip01g02372 1273 MobiDBLite consensus disorder prediction 1 15 - -
Aip01g02372 1273 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 21 1270 - -
Aip01g02372 1273 ProSitePatterns ABC transporters family signature. 515 529 IPR017871 GO:0005524
Aip01g02372 1273 CDD ABC_MTABC3_MDL1_MDL2 1030 1265 - -
Aip01g02372 1273 Pfam ABC transporter 395 543 IPR003439 GO:0005524
Aip01g02372 1273 Pfam ABC transporter 1050 1198 IPR003439 GO:0005524
Aip01g02372 1273 Gene3D - 374 633 IPR027417 -
Aip01g02372 1273 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1030 1267 IPR003439 GO:0005524
Aip01g02372 1273 Gene3D - 1021 1272 IPR027417 -
Aip01g02372 1273 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1023 1267 IPR027417 -
Aip01g02372 1273 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 54 341 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip01g02372 1273 SUPERFAMILY ABC transporter transmembrane region 40 360 IPR036640 GO:0005524|GO:0016021
Aip01g02372 1273 CDD ABC_6TM_Pgp_ABCB1_D2_like 699 1014 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Aip01g02372 Aip-Chr1 122929718 122935420 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02372 21 1268 Calmodulin-binding Proteins AT2G36910 45.886 0.0 1083
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02372 K05658 - gmx:100776122 1969.51
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02372 01 122929718 122935420 Aip01g02372 01 122929718 122935420 ECH