Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02344 ATGGAAGCCAGATTTGGGGGAAAGAATCAGTTTTTATATGGAGCTGTGGTTCCAGAAATGAAAGGTGTTGGGAAGAGGAGTTTGGAGTGGGATTTGAATGATTGGAGATGGGACGGTGATCTCTTCACTGCTCAACAACTCAATTCGGTTCCATCAGATTGTAGAAGCCGCCAATTTTTCCCACCAAATCCTGAGATTCATGCAAATAATAATGCTATTAATGCATCTAACAGTATCTCTTCTTCAATCAACCCTGGTGAAGAAGGGAAGAGAGAGTTGGAGAAGAAGAGAAGAGCTGTTGTAATAGGTGAAGGCGAAGAAAGGGAGGAGCTGAATGATGAAGGAGGAGGTGGTGGTGGTGGTGGTGGTAGTTCTCTTAATTTGAATCTTGGAGCTCAGGTTTACCCAATCATGGTGGAAGGGGATGAGAAAAGTGGGAAGAAGACAAAGGTAGTAGAGACAGCTGCTACAACTTCTAACCGTGCAGTTTGTCAGGTACAAGATTGTAGGGTTGATCTTAGTGGTGCAAAGGATTACCACCGTCGACATAAAGTTTGTGATGTGCATTCTAAAGCTACCAAGGCCCTTGTGGGAAATGTTATGCAGCGGTTTTGTCAACAGTGTAGCAGGTTTCATGCACTTGAGGAGTTTGATGAAGGGAAGCGGAGTTGTCGTAGGCGTCTGGCAGGCCACAATAGGAGGAGGAGGAAAACGCATCCTGATGCAGCTGGAGTTAATGGAGGTTCTCTGAATGGTGAAAGGGGTAGTAGCTATCTGTTGATGAGTTTGTTACGGATACTGTCCAATATGCATTCAAACGGGTCAGATAATACGAGGAACCAGGATATTCTCTCTCATCTACTGGGGAACCTGGCAAATCTGGCGGGTACACTTAATGAAAGAAGTGTAGCCTCTTTGCTGGAGGGATCTCAAGGTTTGGTAAATTCTAGGACACCTGAAGCTGCGCACAATGTGCCAAATCTTAATTCTAATGGTCCTGAAGCCTCAAGGCCTTCTGGTTCTTCCATCAAGACGGGTAACGGTGCCATCCGGCAGGATCCTCCAAGGTCTATGGTACAGTGTGAGGCAGCACCTTCGAATGCTGTCACAGAAAAATGCCTACCTTTAGGTCATGGTGCAGCGGCAAATTTGAAACCTTCGGGAATCCAGCCCTCCTCAAATATACTTCTATCGAGGGATAGCCAACCATCCCAGTTAATTGCAGCAGATACTAGTGTTGGAAGGGATCACTTAAATAACATCGACCTGAATAATGTATATGATGATACACAGGATTGTGCCGAGAATCCTAAGAAGTCTTCTGCTCCCATGGGAGAGGTTAGGTCTCTTGATCATCCTTTGTGGTTGCAATGTAACTCTCTCAAATCAAGTCCACCACAGACAAGTATAAACTCAGATTCAACCTCCACCCAGTCACCATCTAGTTCTAGTGGAGAAGCTCAGTCTCGCACAGATCGAATAGTTTTCAAACTCTTTGGCAAGGATCCAAGTGATTTTCCCCATGTTCTCCGATCACAGATCCTCAATTGGTTATCACACAGTCCTACCGAGATTGAGAGCTATATAAGGCCAGGCTGTATCGTGTTAACAATATATCTCCGCCTCGAGAAATCCGCATGGGAGGAGCTCTCCTGTAACCTCGGATCCAGCTTGAGCAAGCTTGCTTCAAATGATTCTTTCTGGACAACAGGTTGGGTATATACAAGGGTGCAACAATCTGTAGCGTTTTTGTATAACGGCCAAGTTGTCTTAGACGCTCCCTTGCATCTTAGAAGCCCACAGAATTGTAGGATTTCATGCATTAAACCACTTGCTGTTCCTAAAAATGCAAATGCTAAGTTTACTGTGAAAGGGTTCAACCTTTTCAGATCCAGCACAAGGATGCTTTGTGCTTTTGAAGGGAAGTATCTGGTACATGATAGTTCTCATGATTTGATTGATGTAGCCGATGTATCCGATGCAGCTATCCAACATCTCAGCTTCTCTTGTCAAATACCAAATGTAACTGGCAGGGGGTTTCTTGAGGTGGAAGATCATGGTCTTAGCAGCTGTTCCTTTCCATTTATAGTCGCAGAGCAAGAAATTTGTACAGAGATCTGCAAGCTGGAGAATGTGATTGAGGCGGCAGATGCCACTGATGACATATTGTTAAAGAGCAAACAAATAGAAGAAAAGACTCGAGCTCTGGAATTCTTACAAGAAATGGGTTGGCTTCTTCATAGAAGTCGTTTGAATGTTAGGCTAGGTACCCTGGCGCCTAGTCAGGATCCCTTTCATTTCAATCGGTTCGTGTGGCTTGTTGATTTCTCCATGGACCATGATTGGTGTGCAGTGGTGAAAAAACTCTTGGACATTATATTTGAGGATGGTGTTGATGTAGGAGATCATACCTCCATCGAGCTCGCGTTATTGGACATGGGTCTTCTACACAAAGCTGTGAAGAGAAATTCAAGGCCTATGGTGGAACTATTGTTAAAATTTGTACCCACGAAAAGTTCAGCTGGGGCAACCAAATTCTTATTTAGACCTGATAATGTTGGGCCGGCAGGGTTAACTCCACTTCATGTCGCAGCAAGCATGAAAGGCTCTGAGAATGTCTTGGATGCGTTAACTGATGATCCAGGAATGGTTGGAATTGAAGCATGGAAAAGTGCTAGGGACAATACAGGCTTGACGCCTAACGATTATGCAAGCCTCCGCGGCTATTTCTCCTATATTCAACTTGTCCAGAAGAACACCAACAAAAGGCGCGAAGGACAACATGTGCTTGATATCCCTGGCGCCATTGTAGACAGTAACACAAAGCAGAAGCAACTAGATGTGAACAGGACATCTAAGCTTGCAAGTTTGCACACCGAGAAGATCGAAACCACAGTGATGGCGAGTCAATGCGGGCTATGCCAGCACAGGCTGGCTTATGGCGGCACGAGAGCGGCACTGGTTTATCGGCCGGCAATGCTCTCACTTGTGGCCATTGCAGCTGTTTGTGTATGTGTGGCATTGCTCTTCAAAAGCTCACCTAAAGTTTACTATGTCTTCCAGCCTTTCAACTGGGAATCACTAGGATATGGTTATATCTAA 3102 0.45 MEARFGGKNQFLYGAVVPEMKGVGKRSLEWDLNDWRWDGDLFTAQQLNSVPSDCRSRQFFPPNPEIHANNNAINASNSISSSINPGEEGKRELEKKRRAVVIGEGEEREELNDEGGGGGGGGGSSLNLNLGAQVYPIMVEGDEKSGKKTKVVETAATTSNRAVCQVQDCRVDLSGAKDYHRRHKVCDVHSKATKALVGNVMQRFCQQCSRFHALEEFDEGKRSCRRRLAGHNRRRRKTHPDAAGVNGGSLNGERGSSYLLMSLLRILSNMHSNGSDNTRNQDILSHLLGNLANLAGTLNERSVASLLEGSQGLVNSRTPEAAHNVPNLNSNGPEASRPSGSSIKTGNGAIRQDPPRSMVQCEAAPSNAVTEKCLPLGHGAAANLKPSGIQPSSNILLSRDSQPSQLIAADTSVGRDHLNNIDLNNVYDDTQDCAENPKKSSAPMGEVRSLDHPLWLQCNSLKSSPPQTSINSDSTSTQSPSSSSGEAQSRTDRIVFKLFGKDPSDFPHVLRSQILNWLSHSPTEIESYIRPGCIVLTIYLRLEKSAWEELSCNLGSSLSKLASNDSFWTTGWVYTRVQQSVAFLYNGQVVLDAPLHLRSPQNCRISCIKPLAVPKNANAKFTVKGFNLFRSSTRMLCAFEGKYLVHDSSHDLIDVADVSDAAIQHLSFSCQIPNVTGRGFLEVEDHGLSSCSFPFIVAEQEICTEICKLENVIEAADATDDILLKSKQIEEKTRALEFLQEMGWLLHRSRLNVRLGTLAPSQDPFHFNRFVWLVDFSMDHDWCAVVKKLLDIIFEDGVDVGDHTSIELALLDMGLLHKAVKRNSRPMVELLLKFVPTKSSAGATKFLFRPDNVGPAGLTPLHVAASMKGSENVLDALTDDPGMVGIEAWKSARDNTGLTPNDYASLRGYFSYIQLVQKNTNKRREGQHVLDIPGAIVDSNTKQKQLDVNRTSKLASLHTEKIETTVMASQCGLCQHRLAYGGTRAALVYRPAMLSLVAIAAVCVCVALLFKSSPKVYYVFQPFNWESLGYGYI 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02344 1033 SUPERFAMILY SBT domain 162 242 IPR036893 GO:0003677|GO:0005634
Aip01g02344 1033 Pfam SBP domain 164 237 IPR004333 GO:0003677
Aip01g02344 1033 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 13 1032 IPR044817 GO:0003677
Aip01g02344 1033 MobiDBLite consensus disorder prediction 317 348 - -
Aip01g02344 1033 MobiDBLite consensus disorder prediction 77 96 - -
Aip01g02344 1033 MobiDBLite consensus disorder prediction 104 123 - -
Aip01g02344 1033 ProSiteProfiles Zinc finger SBP-type profile. 161 238 IPR004333 GO:0003677
Aip01g02344 1033 MobiDBLite consensus disorder prediction 228 250 - -
Aip01g02344 1033 SUPERFAMILY Ankyrin repeat 813 917 IPR036770 -
Aip01g02344 1033 MobiDBLite consensus disorder prediction 462 489 - -
Aip01g02344 1033 MobiDBLite consensus disorder prediction 317 354 - -
Aip01g02344 1033 Gene3D - 155 225 IPR036893 GO:0003677|GO:0005634
Aip01g02344 1033 Gene3D - 783 932 IPR036770 -
Aip01g02344 1033 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 13 1032 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02344 Aip-Chr1 122226248 122232307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02344 1 1031 SBP-box Gene Family AT3G60030 46.279 0.0 796
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Aip01g02344 SBP 5.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02344 - - gmx:100776125 1417.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02344 01 122226248 122232307 Aip01g02344 01 122226248 122232307 ECH