LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip01g02337	atgctcgattgtaaaggagtggtgcgcgtggttttttcttgggcttgggccaacttgtatagcACGTCCCCTCTAGCTTCCTCTCCTTGCCATCCCCTGCGTCTTCTCCGCCAAAATCTCAGCGCCTCCCTTTCGTTCTGGATCAGAAAGGAGATTGCTTTCTTCGATGTTACTCGAACGGGAGAAATCTTAAGTAGGTTGTCGGAAGATACACAGATCATAAAGAATGCCGCAACTACCAATGTTTCTGAGGCCATGAAGAACCTAGCAACAGCACTTATGGGTCTCAGCTTCATGTTTGCAACATCTTGGAAGTTAACATTGTTGGCTTTGGCTGTTGTGCCTGTAATTTCTGTTGCTGTCTGTAAATTTAGGCATTTGCTGCGTGAACTATCTCACAAAATTCAAACTGCAGCTGCAGTAGCATCTTCAATTGCTGAGAAAGTCGTTGGACTCTTTTCTGGAGGCTTTAATGCAGCGTCCACACTTTCTGTTATCGTAGCAGTGGGATCTTCTATATCTTCTATATCTTTTTTGTTAATCACAACCTGTCTAATAAGACTAAATGGCTACCGGAAACCTGGTTTGATTGCATTGTTTGATGTTGATGTCACTCTTATAGCCCCAAGGAAGTTTAAGGTTACTAATTTTACTTGCGCCCTCAGCGCTAAGCTTAGAGCTGAATCTTTAGCTCTGACCCTGCAAGCATCTTGCAATTTAAAAGATTCAAAAGAACTTTTTGAAAGATGTCTAAATGCGTGGAAAGTCTTACTTCCTGATGACCATATTCAGGTTTGTTGTTCCCTGACAAGTGGATTTGACACCGCACATGCAGCTGCTCGTGCTTATGATAGAGCGGCAATTAAGTTCCACGGAGTGGAGGCTGACATTAACTTCAACATAGAAGACTACGAAGAAGACTTGAAGCAGATGACGAATTTGACAAAGGAAGAATTTGTGCACGTGCTTCGGCGACAAGAGTTGAATGATTCAAGATGGGATTCAGATTATGAGAAACTGTGGAAGCCTCCACCAAATCATGGCTTTCTACCCTGCACTAAGCTTACTCCTAATTATACAACTTCTCTTCCTCTTCCTACTTCTCCCTTGCTATTTTTCTCCTCACCTTCTCAACCTTCACTGGCAGATTCCCCTTAA	1158	0.4041	MLDCKGVVRVVFSWAWANLYSTSPLASSPCHPLRLLRQNLSASLSFWIRKEIAFFDVTRTGEILSRLSEDTQIIKNAATTNVSEAMKNLATALMGLSFMFATSWKLTLLALAVVPVISVAVCKFRHLLRELSHKIQTAAAVASSIAEKVVGLFSGGFNAASTLSVIVAVGSSISSISFLLITTCLIRLNGYRKPGLIALFDVDVTLIAPRKFKVTNFTCALSAKLRAESLALTLQASCNLKDSKELFERCLNAWKVLLPDDHIQVCCSLTSGFDTAHAAARAYDRAAIKFHGVEADINFNIEDYEEDLKQMTNLTKEEFVHVLRRQELNDSRWDSDYEKLWKPPPNHGFLPCTKLTPNYTTSLPLPTSPLLFFSSPSQPSLADSP	385

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip01g02337	385	SUPERFAMILY	ABC transporter transmembrane region	46	168	IPR036640	GO:0005524\|GO:0016021
	Aip01g02337	385	SMART	rav1_2	271	306	IPR001471	GO:0003700\|GO:0006355
	Aip01g02337	385	SUPERFAMILY	DNA-binding domain	272	301	IPR016177	GO:0003677
	Aip01g02337	385	Pfam	ABC transporter transmembrane region	49	150	IPR011527	GO:0005524\|GO:0016021\|GO:0055085\|GO:0140359
	Aip01g02337	385	Gene3D	ABC transporter type 1, transmembrane domain	6	155	IPR036640	GO:0005524\|GO:0016021
	Aip01g02337	385	ProSiteProfiles	ABC transporter integral membrane type-1 fused domain profile.	47	147	IPR011527	GO:0005524\|GO:0016021\|GO:0055085\|GO:0140359
	Aip01g02337	385	PANTHER	ABC TRANSPORTER B FAMILY MEMBER 25	36	148	-	-
	Aip01g02337	385	PANTHER	ATP-BINDING CASSETTE SUB-FAMILY B	36	148	IPR039421	-
	Aip01g02337	385	Gene3D	AP2/ERF domain	251	302	IPR036955	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip01g02337	Aip-Chr1	121856072	121861617	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip01g02337	247	338	AP2-EREBP Transcription Factor Family	AT2G39250	48.913	2.82e-20	87.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip01g02337	-		-	ahf:112722681	387.497