Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02313 ATGGCAGAATCACCTGAAACAGAAGAAAAGTTTCAAGCTTCAACCATCGTTATGAACGAAACGAAGAAAAAGATGAAGAATAAGAATAAGAAGAAGCGGCCTCGGGATTCTGAATCAGAGAACCAATCAGCTGAACCTCAACATGAAGAGGGCGCAGAATCCTTGGAAAACAATGCGAACAAGAAGAAGAAGAATAAGAAGTTGAAGGGAGTGGAAGAAGATAGCGACGTTGATAAAAATGGTGAAGAAGAAGAAGAGGAAGAAGAGAGGAAAGAGAAGAAGAAGAACAAGGGTGGTGGTGGTGGAATAATGAGTAACGATGAATTCTCTTCTCTAGGGTTATCAGAACCAACTTCGAAGGCAATTCGGGATATGGGGTTCTCATACATGACTCAGATTCAATCGAGGGCAATTCCACATCTTCTAATAGGAAAAGATGTTCTTGGCGCTGCCAGAACCGGTTCCGGGAAAACCCTTGCTTTTCTGGTCCCTGCTGTGGAGCTTCTCTATAATGTTCAGTTCACCCCTCGTAATGGTGCTGGTGTTATTATCATTTGCCCCACCAGAGAGCTTGCAATTCAGACGCATGCTGTAGCCAAGGAACTCCTCAAGTATCATTCGCAGACTCTTGGATTGATTATTGGAGGTTCGACGAGAAAACTCGAAGCCGAACGCATTGCTAAAGGGGTCAATCTGCTCGTGGCAACTCCTGGTCGTCTTCTGGATCATCTTCAGAATACAAAAGGGTTCATATATAAAAACTTGAAGTGCCTCATGATTGATGAAGCTGACAGGATATTAGAAGCTAACTTTGAGGAAGAAATGAAGCAGATTATTAAGATCCTTCCAAAGAATAGGCAAACGGCTTTATTTTCGGCTACGCAAACAAAGAAGGTTGAGGATCTTGCACGCTTGTCATTTCAGACAACTCCTATATATATTGATGTAGATGATGGGAGAACCAAGGTTACAAATGAAGGGTTAATGCAGGGTTATGTTGTTGTTCCCTGTGCCAAGCGATTCATGGTTCTCTATTCCTTCTTGAAGAGATTTCATTCAAAAAAAGTGATGGTGTTTTTTTCTTCATGTAACTCTGTGAAATTCCATACAGACATTCTTAATCATATTCATTTGAATTGCTCAAGTATTCATGGAAAACAAAAGCAGCAGACCCGAACAACCACCTTCTTTGACTTCTGCAAAGCAGAAAAGGGGATCTTGCTCTGTACTGATGTTGCTGCTCGTGGACTTGACATACCTGCTGTGGACTGGATTGTGCAGTATGATCCACCAGATGAACCGAAGGAATATATCCACAGGGTTGGTAGAACAGCTCGTGGGGAAGGTGGAAAAGGAAATGCTTTGCTGTTCCTGATTCCTGAAGAATTACAATTTCTTCGTTATCTGAAGGCAGCTAAGGTCCCTGTGAAAGAGTATGGATATGATGAAAAGAAGGTGGCAAATGTACAATCTCACCTGGAGGATTTGGTAGTCAACAACTTTTTCCTAAACAAGATGGCTAAAGATGCGCATAGATCGTATCTATTGGCATACAATTCACATTCTATGAAGGATATATTCAATGTACACCGCCTTGATCTGAAGGACGTAGCGGCTTCTTTCTGTCTCGCAAACCCACCAAATGTGACTCTGAACTTGAACAGCAGTAAGAAAAGGAAGAACATGCGCAGAGTTGATGGAAGTAGTCACACCAGCCCTCATGGAAAAAGAAATGTTCATTCTAAAAAGCAATTTGTGAGGCATTAG 1767 0.4188 MAESPETEEKFQASTIVMNETKKKMKNKNKKKRPRDSESENQSAEPQHEEGAESLENNANKKKKNKKLKGVEEDSDVDKNGEEEEEEEERKEKKKNKGGGGGIMSNDEFSSLGLSEPTSKAIRDMGFSYMTQIQSRAIPHLLIGKDVLGAARTGSGKTLAFLVPAVELLYNVQFTPRNGAGVIIICPTRELAIQTHAVAKELLKYHSQTLGLIIGGSTRKLEAERIAKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIIKILPKNRQTALFSATQTKKVEDLARLSFQTTPIYIDVDDGRTKVTNEGLMQGYVVVPCAKRFMVLYSFLKRFHSKKVMVFFSSCNSVKFHTDILNHIHLNCSSIHGKQKQQTRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYGYDEKKVANVQSHLEDLVVNNFFLNKMAKDAHRSYLLAYNSHSMKDIFNVHRLDLKDVAASFCLANPPNVTLNLNSSKKRKNMRRVDGSSHTSPHGKRNVHSKKQFVRH 588
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02313 588 Coils Coil 77 97 - -
Aip01g02313 588 SMART helicmild6 367 448 IPR001650 -
Aip01g02313 588 Pfam Helicase conserved C-terminal domain 343 447 IPR001650 -
Aip01g02313 588 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 138 313 IPR014001 -
Aip01g02313 588 MobiDBLite consensus disorder prediction 552 588 - -
Aip01g02313 588 SMART DUF4217_3 488 551 IPR025313 -
Aip01g02313 588 PANTHER RNA HELICASE 49 576 - -
Aip01g02313 588 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 49 576 - -
Aip01g02313 588 Pfam DEAD/DEAH box helicase 131 302 IPR011545 GO:0003676|GO:0005524
Aip01g02313 588 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 259 267 IPR000629 -
Aip01g02313 588 MobiDBLite consensus disorder prediction 1 114 - -
Aip01g02313 588 Gene3D - 53 317 IPR027417 -
Aip01g02313 588 CDD DEADc_DDX18 118 315 IPR044773 GO:0003724|GO:0005524
Aip01g02313 588 Pfam Domain of unknown function (DUF4217) 489 549 IPR025313 -
Aip01g02313 588 Gene3D - 324 567 IPR027417 -
Aip01g02313 588 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 107 135 IPR014014 GO:0003724
Aip01g02313 588 SMART ultradead3 126 331 IPR014001 -
Aip01g02313 588 MobiDBLite consensus disorder prediction 32 76 - -
Aip01g02313 588 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 469 IPR027417 -
Aip01g02313 588 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 343 497 IPR001650 -
Aip01g02313 588 MobiDBLite consensus disorder prediction 559 573 - -
Aip01g02313 588 CDD SF2_C_DEAD 328 458 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Aip01g02313 Aip-Chr1 121286042 121290515 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02313 102 467 Eukaryotic Initiation Factors Gene Family AT3G19760 28.065 8.23e-45 162
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02313 K13179 - gmx:100797375 895.575
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02313 01 121286042 121290515 Aip01g02313 01 121286042 121290515 ECH