Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aip01g02313 | ATGGCAGAATCACCTGAAACAGAAGAAAAGTTTCAAGCTTCAACCATCGTTATGAACGAAACGAAGAAAAAGATGAAGAATAAGAATAAGAAGAAGCGGCCTCGGGATTCTGAATCAGAGAACCAATCAGCTGAACCTCAACATGAAGAGGGCGCAGAATCCTTGGAAAACAATGCGAACAAGAAGAAGAAGAATAAGAAGTTGAAGGGAGTGGAAGAAGATAGCGACGTTGATAAAAATGGTGAAGAAGAAGAAGAGGAAGAAGAGAGGAAAGAGAAGAAGAAGAACAAGGGTGGTGGTGGTGGAATAATGAGTAACGATGAATTCTCTTCTCTAGGGTTATCAGAACCAACTTCGAAGGCAATTCGGGATATGGGGTTCTCATACATGACTCAGATTCAATCGAGGGCAATTCCACATCTTCTAATAGGAAAAGATGTTCTTGGCGCTGCCAGAACCGGTTCCGGGAAAACCCTTGCTTTTCTGGTCCCTGCTGTGGAGCTTCTCTATAATGTTCAGTTCACCCCTCGTAATGGTGCTGGTGTTATTATCATTTGCCCCACCAGAGAGCTTGCAATTCAGACGCATGCTGTAGCCAAGGAACTCCTCAAGTATCATTCGCAGACTCTTGGATTGATTATTGGAGGTTCGACGAGAAAACTCGAAGCCGAACGCATTGCTAAAGGGGTCAATCTGCTCGTGGCAACTCCTGGTCGTCTTCTGGATCATCTTCAGAATACAAAAGGGTTCATATATAAAAACTTGAAGTGCCTCATGATTGATGAAGCTGACAGGATATTAGAAGCTAACTTTGAGGAAGAAATGAAGCAGATTATTAAGATCCTTCCAAAGAATAGGCAAACGGCTTTATTTTCGGCTACGCAAACAAAGAAGGTTGAGGATCTTGCACGCTTGTCATTTCAGACAACTCCTATATATATTGATGTAGATGATGGGAGAACCAAGGTTACAAATGAAGGGTTAATGCAGGGTTATGTTGTTGTTCCCTGTGCCAAGCGATTCATGGTTCTCTATTCCTTCTTGAAGAGATTTCATTCAAAAAAAGTGATGGTGTTTTTTTCTTCATGTAACTCTGTGAAATTCCATACAGACATTCTTAATCATATTCATTTGAATTGCTCAAGTATTCATGGAAAACAAAAGCAGCAGACCCGAACAACCACCTTCTTTGACTTCTGCAAAGCAGAAAAGGGGATCTTGCTCTGTACTGATGTTGCTGCTCGTGGACTTGACATACCTGCTGTGGACTGGATTGTGCAGTATGATCCACCAGATGAACCGAAGGAATATATCCACAGGGTTGGTAGAACAGCTCGTGGGGAAGGTGGAAAAGGAAATGCTTTGCTGTTCCTGATTCCTGAAGAATTACAATTTCTTCGTTATCTGAAGGCAGCTAAGGTCCCTGTGAAAGAGTATGGATATGATGAAAAGAAGGTGGCAAATGTACAATCTCACCTGGAGGATTTGGTAGTCAACAACTTTTTCCTAAACAAGATGGCTAAAGATGCGCATAGATCGTATCTATTGGCATACAATTCACATTCTATGAAGGATATATTCAATGTACACCGCCTTGATCTGAAGGACGTAGCGGCTTCTTTCTGTCTCGCAAACCCACCAAATGTGACTCTGAACTTGAACAGCAGTAAGAAAAGGAAGAACATGCGCAGAGTTGATGGAAGTAGTCACACCAGCCCTCATGGAAAAAGAAATGTTCATTCTAAAAAGCAATTTGTGAGGCATTAG | 1767 | 0.4188 | MAESPETEEKFQASTIVMNETKKKMKNKNKKKRPRDSESENQSAEPQHEEGAESLENNANKKKKNKKLKGVEEDSDVDKNGEEEEEEEERKEKKKNKGGGGGIMSNDEFSSLGLSEPTSKAIRDMGFSYMTQIQSRAIPHLLIGKDVLGAARTGSGKTLAFLVPAVELLYNVQFTPRNGAGVIIICPTRELAIQTHAVAKELLKYHSQTLGLIIGGSTRKLEAERIAKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIIKILPKNRQTALFSATQTKKVEDLARLSFQTTPIYIDVDDGRTKVTNEGLMQGYVVVPCAKRFMVLYSFLKRFHSKKVMVFFSSCNSVKFHTDILNHIHLNCSSIHGKQKQQTRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYGYDEKKVANVQSHLEDLVVNNFFLNKMAKDAHRSYLLAYNSHSMKDIFNVHRLDLKDVAASFCLANPPNVTLNLNSSKKRKNMRRVDGSSHTSPHGKRNVHSKKQFVRH | 588 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aip01g02313 | 588 | Coils | Coil | 77 | 97 | - | - | |
Aip01g02313 | 588 | SMART | helicmild6 | 367 | 448 | IPR001650 | - | |
Aip01g02313 | 588 | Pfam | Helicase conserved C-terminal domain | 343 | 447 | IPR001650 | - | |
Aip01g02313 | 588 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 138 | 313 | IPR014001 | - | |
Aip01g02313 | 588 | MobiDBLite | consensus disorder prediction | 552 | 588 | - | - | |
Aip01g02313 | 588 | SMART | DUF4217_3 | 488 | 551 | IPR025313 | - | |
Aip01g02313 | 588 | PANTHER | RNA HELICASE | 49 | 576 | - | - | |
Aip01g02313 | 588 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 | 49 | 576 | - | - | |
Aip01g02313 | 588 | Pfam | DEAD/DEAH box helicase | 131 | 302 | IPR011545 | GO:0003676|GO:0005524 | |
Aip01g02313 | 588 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 259 | 267 | IPR000629 | - | |
Aip01g02313 | 588 | MobiDBLite | consensus disorder prediction | 1 | 114 | - | - | |
Aip01g02313 | 588 | Gene3D | - | 53 | 317 | IPR027417 | - | |
Aip01g02313 | 588 | CDD | DEADc_DDX18 | 118 | 315 | IPR044773 | GO:0003724|GO:0005524 | |
Aip01g02313 | 588 | Pfam | Domain of unknown function (DUF4217) | 489 | 549 | IPR025313 | - | |
Aip01g02313 | 588 | Gene3D | - | 324 | 567 | IPR027417 | - | |
Aip01g02313 | 588 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 107 | 135 | IPR014014 | GO:0003724 | |
Aip01g02313 | 588 | SMART | ultradead3 | 126 | 331 | IPR014001 | - | |
Aip01g02313 | 588 | MobiDBLite | consensus disorder prediction | 32 | 76 | - | - | |
Aip01g02313 | 588 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 179 | 469 | IPR027417 | - | |
Aip01g02313 | 588 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 343 | 497 | IPR001650 | - | |
Aip01g02313 | 588 | MobiDBLite | consensus disorder prediction | 559 | 573 | - | - | |
Aip01g02313 | 588 | CDD | SF2_C_DEAD | 328 | 458 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aip01g02313 | Aip-Chr1 | 121286042 | 121290515 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aip01g02313 | 102 | 467 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 28.065 | 8.23e-45 | 162 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aip01g02313 | K13179 | - | gmx:100797375 | 895.575 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Aip01g02313 | 01 | 121286042 | 121290515 | Aip01g02313 | 01 | 121286042 | 121290515 | ECH |