Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02310 ATGGAGCCTATGGACATCGTCGGCAAATCGAAGGAAGATGCTTCGCTTCCTAAAGCAACAATGACAAAAATTATTAAAGAGATGTTACCTCCAGATGTACGTGTTGCAAGAGACGCACAAGATCTATTGATCGAGTGTTGTGTAGAATTTATAAACCTTGTTTCGTCGGAGTCCAATGAAGTCTGTAGCAGAGAGGAAAAACGGACTATTGCACCTGAGCATGTACTGAAGGCTTTAGAGGTCCTCGGCTTTGGCGAGTACATTGAAGAAGTCTATGCAGCATATGAACAGCACAAGCTGGAGACCATGGTAATCTTAATATTTATGCACCATCCATGCTGA 342 0.4269 MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSREEKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETMVILIFMHHPC 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02310 113 PANTHER PROTEIN DR1 HOMOLOG 1 103 IPR044255 -
Aip01g02310 113 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Aip01g02310 113 PANTHER PROTEIN DR1 HOMOLOG 1 103 - -
Aip01g02310 113 SUPERFAMILY Histone-fold 12 99 IPR009072 GO:0046982
Aip01g02310 113 Gene3D Histone, subunit A 4 103 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02310 Aip-Chr1 121266585 121269797 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02310 1 103 CCAAT-DR1 Transcription Factor Family AT5G23090 93.204 5.85e-69 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Aip01g02310 CBFD_NFYB_HMF 2.4e-22 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02310 K21751 - zju:107418942 205.297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02310 01 121266585 121269797 Aip01g02310 01 121266585 121269797 ECH