Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02287 ATGGAACACCAAGCTAAGCTCGCACAGCAACGGCGGATGAATTTGCTGGGTCATAAGAGGCGCCAGGTCAACGTGTTGATGACTCCATCCGGCCCCGAGAATGGTTCCTCACCATGGAACGTACCTAGGTTTGGTGACAAACAAAAGCCTTCCATAACACGTACCACTCTGGTTGGCTATTCCCCTTTGTCCCAGTTTTCAAATTTTTATCTGGCTGAGGCAAGCGACGTCCAAGTTGAAGCTTCTGTTGCATCTTCTACTGAACCAGATGTTTGGTCAACTGGGCTGCCCACGCAAAGATGTGTTTTTTGTGGGGCCAATAACACTATATTATTTGCTATTTGTTGTATGAGTGGAAAGGTCACTCTCCCTTTGTTGCCCGTTCCGCCTCCATTGTTGGGGGTGTTGTTGGATGGTGATGATGAACGAACTTTGCATTATCAGAAACATATCAGGGCCTTTAATGGTATGTTTTTGTTCACATCTATGGCTGGGAAGATTCAGTACACACTAAACAAGGGTCCCGCTCCCCCCATGTTTGTTATTAGTGGCCAAAATTACCATTCAATTGGAAGTTTGATGCCACAGCAGTCTAGCAAGCTCAAGTTTGCTCAGCTCTATTTTTATGATACGGAAATTAAAGTCCAGAATAGGATTGACGCAATTGGCCTGTCTTATCAACACAAATCTATAGATCAGACCATTGTGGCCGACCTCAGCAGCATGCTTGATTCCCACAATTCTCTTGCTAAGTCTTTTCAATATGCTAGGCAAAGGTTCGCTGAAGATTCAACCACTCCGCTACAGCTTCATCTTattaagaagaggaatactgatgGTCTCCAGTGTTCCGTTGATGAGATGAAGTCCACCACGCTTGCCAAAATTGAAAAACTTTTGCAGCTGAATGGTAGGAGCCTAAAAGAATTTACTGACATGCCGTTTCTTGATTCTGTTGATTCGACTGAACCTTCCGACATAGTCTTCTTTGATGAGCTCAATTTCGACAGGACAGAGTTGGCAAGTATTTCCGTTGATTTGGTTTCCCGGTTGAATCGAGACCAGTGCGTTGCGTTCCACACAATAGCAAATGCAGTCCGGGTTGGTAgtcgtagtcgctctttgtctcgtcaccgtctcgcactcagtcgcgcgccttccctgcgctcatcaccggtggcggaagaagcagcacgtcccggggccggtcgtcgttgtcgtcttcttgcttcgagcctcgccgtcagcagctggtcccgatttcCATATGGAGTGAACATCCTTGGTTCCTTAATGGCCCAAGACCCAACTTCTGGTGCTGATTCGCCTCGTACGAGGCGTTATGGCCTACTACGGGACCAAGTTCAACTGGTTAAAAGAAAGGATTGTGATCGCTATGAAATTGTTCCAATCCAGGATTCCTTGTCGTTTGAGAAAGGATTTTTCATCGTGATTCGTGCATGCCAGTTGTTGGCTCAAAAGAATGATGGGATCATATTAGTAGGACTTGCAGGTCCCTCTGGAGCAGGCAAAACTGTTTTCACTGAGAAGGTCAACAATTTTATGCCAAGCTTAGCCGTCATCACAATGGACAATTATAACGATTCTAGTCGAATCATAGATGGCAATTTTGATGACCCTCGTTTGACGGATTATGATACCTTGCTTGAAAATATAATGGGTCTTAAAGAAGGGAAGGCAGTACAGGTTCCAATATATGATTTCAAGACTAGTTCTCGCGTAGGTTACAGGACTGTTGAAGTCCCTAGTTCCCGCATTGTCATCATAGAAGGCATTTATGCCTTAAGTGAAAAATTACGACCATTGCTTGATCTTCGAGTTTCGGTCACTGGGGGAGTTCACTTTGACCTTGTCAAGCGTGTGCTGCGTGACATTCAACGTGCTGGTCAAGAGCCTGAAGAAATCATTCATCAAATCTCTGAAACGGTATATCCTATGTATAAAGCTTTTATTGAGCCTGATCTTCAAACGGCACATATAAAAATTATTAACAAGTTTAATCCGTTCTCTGGATTCCAGAATCCCACCTACATATTGAAGTCACTAAAAGCTGTGACAGAGGATCAAATCAAGTCAGTTATTGCTGCTGAGCATACTGAGACGAGAGAGGAAACATATGACATATATCTTCTACCCCCAGGGGAAGACCCTGAAGCATGTCAATCATACCTGAGGATGAGAAACCGCGATGGGAAGTATAATCTCATGTTTGAGGAATGGGTCACAGATATTCCATTCATAATATCACCCAGAATAACATTTGAGGTCAGTGTGCGCCTTCTAGGAGGGTTGATGGCATTGGGTTACACAATTGCAGCTATACTAAAACGAAGCAGCCATGTCTTTTCCGATGATAAGGTGACTGTAAAAACTGATTGGCTCGAACAAGTTAACCGCCTATATGTTCAGGTTCAAGGGAAAGATAGAAACTATGTTAAACTTGTTGCAGAGAAACTGGGATTGGATGGTTCATATGTTCCTCGCACTTACATAGAACAAATTCAGCTAGAAAAGCTTGTTAATGATGTAATGGCACTGCCAGAGGATCTTAAGACAAAGCTCAGCATTGATGATGATATGGTTTCAAGCCCTAAAGAAGCCCTTTCTCGAGCTTCTGCTGATAGGAGAATGAAGTATCTGAATCGTGGTATTTCTCACTCATTTTCAACTCAGAGAGAGAAGCATCTATCTAAGTTGACTAGACTAGCTATAAATAACAGAAGATTTGATGGGAGAGCTCTTGAATCACCTGCGCCAGTTGCCAACCAAGGAGTCATCACTCAGCTTTCTGAACAAATATCCACATTAACTGAAAGAATGGATGAGTTCACGAATCGTATTGAGGAGCTAAATTCAAAGTTTGCATCCAGAAAAGCCAGTCAACAGAACATAGCCTTGCCTGCTGAAGCCTGCAATGGCTCAGGTCACACTTCTCTTTTTGTAACTGGATTGGGAAATGGTTCATTGACAAGATCATTGCTGCCTCATTCTTCATCATCTTCCCAATTAGCCAGGGATGCTCCCCTGATGGAAGAGGTTTTGCTTGTTGCACGAGGACAGCGGCAAATTATACATCAACTAGACTCTCTAAGTACTCTGTTGCACGAATACTGCGGAGAAAGGTCGCGACAGGGAAGGACAGACCAGACAAACAGAATGCACGAAGTGGAAACCATTGCCATCCCCCTGGTTCTGACTTTGGCCATTGGTGCTGTTGGTGTCTTCTTGTTCAGGGGTTTCACATCCCAAAAATAA 3276 0.4103 MEHQAKLAQQRRMNLLGHKRRQVNVLMTPSGPENGSSPWNVPRFGDKQKPSITRTTLVGYSPLSQFSNFYLAEASDVQVEASVASSTEPDVWSTGLPTQRCVFCGANNTILFAICCMSGKVTLPLLPVPPPLLGVLLDGDDERTLHYQKHIRAFNGMFLFTSMAGKIQYTLNKGPAPPMFVISGQNYHSIGSLMPQQSSKLKFAQLYFYDTEIKVQNRIDAIGLSYQHKSIDQTIVADLSSMLDSHNSLAKSFQYARQRFAEDSTTPLQLHLIKKRNTDGLQCSVDEMKSTTLAKIEKLLQLNGRSLKEFTDMPFLDSVDSTEPSDIVFFDELNFDRTELASISVDLVSRLNRDQCVAFHTIANAVRVGSRSRSLSRHRLALSRAPSLRSSPVAEEAARPGAGRRCRLLASSLAVSSWSRFPYGVNILGSLMAQDPTSGADSPRTRRYGLLRDQVQLVKRKDCDRYEIVPIQDSLSFEKGFFIVIRACQLLAQKNDGIILVGLAGPSGAGKTVFTEKVNNFMPSLAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIMGLKEGKAVQVPIYDFKTSSRVGYRTVEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFSGFQNPTYILKSLKAVTEDQIKSVIAAEHTETREETYDIYLLPPGEDPEACQSYLRMRNRDGKYNLMFEEWVTDIPFIISPRITFEVSVRLLGGLMALGYTIAAILKRSSHVFSDDKVTVKTDWLEQVNRLYVQVQGKDRNYVKLVAEKLGLDGSYVPRTYIEQIQLEKLVNDVMALPEDLKTKLSIDDDMVSSPKEALSRASADRRMKYLNRGISHSFSTQREKHLSKLTRLAINNRRFDGRALESPAPVANQGVITQLSEQISTLTERMDEFTNRIEELNSKFASRKASQQNIALPAEACNGSGHTSLFVTGLGNGSLTRSLLPHSSSSSQLARDAPLMEEVLLVARGQRQIIHQLDSLSTLLHEYCGERSRQGRTDQTNRMHEVETIAIPLVLTLAIGAVGVFLFRGFTSQK 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02287 1091 CDD UMPK_like 500 672 - -
Aip01g02287 1091 ProSiteProfiles CYTH domain profile. 681 843 IPR023577 -
Aip01g02287 1091 Gene3D - 499 681 IPR027417 -
Aip01g02287 1091 PANTHER URIDINE KINASE 437 1079 - -
Aip01g02287 1091 PRINTS Uridine kinase signature 498 515 - -
Aip01g02287 1091 PRINTS Uridine kinase signature 565 580 - -
Aip01g02287 1091 PRINTS Uridine kinase signature 657 670 - -
Aip01g02287 1091 PRINTS Uridine kinase signature 621 631 - -
Aip01g02287 1091 SUPERFAMILY CYTH-like phosphatases 695 840 IPR033469 -
Aip01g02287 1091 Coils Coil 933 960 - -
Aip01g02287 1091 Pfam CYTH domain 703 837 IPR023577 -
Aip01g02287 1091 Pfam Phosphoribulokinase / Uridine kinase family 501 669 IPR006083 GO:0005524|GO:0016301
Aip01g02287 1091 Gene3D - 687 846 - -
Aip01g02287 1091 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 494 669 IPR027417 -
Aip01g02287 1091 PANTHER URIDINE-CYTIDINE KINASE C-LIKE ISOFORM X1 437 1079 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02287 Aip-Chr1 120701586 120715473 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02287 500 669 PRT Gene Family AT5G40870 26.816 2.42e-15 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02287 K00876 - gmx:100803122 1126.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02287 01 120701586 120715473 Aip01g02287 01 120701586 120715473 ECH
Aip05g02228 05 104132728 104141183 Aip01g02287 01 120701586 120715473 PCT