Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02272 ATGTCAGGCGGAAGCAGCAACGGCGACGGAGAATCAGAGTCCTCCCCAAACAAACGCCTCAAAACCGAAGAAGCATCGAAGAAGGTCGACGGTGGCGGAGACGATGATAACCAGGGTGTATGGTGCGGGATCTGCTACGCGGAGCGCGGCGCACCTGTCGCCGGAGAAATCGACTGCTGCAGCCATTACTTCTGCTTCGCATGCATCATGGAGTGGTCCAAGCACGAATCCCGATGCCCGATCTGCCGCCGGAGATTCTCCAACGTTCGCAGGCTCCCCAAGCATGGCATCTTCTCTTCTTCTCGGGACATTAAGGTCCCTCTCCGTGATCAGGTTTATCATCCTTATGGGAATATGAGCACCGGTCCTACTCACTCTCATACTGAGGCCAAATGCGTTGTCTGTCATGGTGTGGCAGATGAACATCTTCTGCTAATTTGTGATCTTTGCGATGCTTCTTCTCATACCTACTGTGTTGGCCTTGGCTACACTGTCCCTGAAGGCGATTGGTTTTGTTATGACTGTGCTATTGCCAGGGAGACCAATGAGCGGGAAGACTTAGAGCTACGAAGTGTCGAGCAAAGTGGGGCGATAAGTGCAATACCATGTCCTTTACAACAAAGCCGGTCCCCTCCTCCTCCTAGTATTCAATCAGCTGATAGGTTAAGTAGATACAGGGGAAAGAGACCTCTGTCAAATGCCCAGCAGGTGCAACGTAACATACAAGCGCTCCGTGATAATTGGAATGCACTGAGAAGTGGTTCCATGAAGTTCGGTTCTGGTTCCATTCAAACCAGTGGCATAGGTGGTTGTCATAATCGAGATTCTGGTTCTGCTTCATGTGGCAGACCCAACAAACAGCATTCTAATTCTATGGGTTTGGGAAGCCTAGGTTCCAGTTCTGGTTCTGTTTCACGCAGCAGATCAGATGAACAACATTCTAATTCTATGGTTTTGGCAAACAGGTGTTCTGGTTCCGTTTTGCATGGCAGATCAGACGAACAGCATTCTAATTCTATGGCTTTGGTAAACCGAGGATCTGGTCCCATTTTGCGTGGCGGACCACACGAACAGCATTCTGATTGTGTGGCTTCGCCAAGAATTCAGCACTCGAGTGTCCAAGATGGTTCATCTAGAGGCATAATGAATGAGAGGGGGGTGAAAGATGTTGAGAAGGCTTGGAAAATGTTGGAGAAGGCAAAGAAGATGCAAGGGACTCGTCAAAGAACCAACAGAAAGTAG 1242 0.4944 MSGGSSNGDGESESSPNKRLKTEEASKKVDGGGDDDNQGVWCGICYAERGAPVAGEIDCCSHYFCFACIMEWSKHESRCPICRRRFSNVRRLPKHGIFSSSRDIKVPLRDQVYHPYGNMSTGPTHSHTEAKCVVCHGVADEHLLLICDLCDASSHTYCVGLGYTVPEGDWFCYDCAIARETNEREDLELRSVEQSGAISAIPCPLQQSRSPPPPSIQSADRLSRYRGKRPLSNAQQVQRNIQALRDNWNALRSGSMKFGSGSIQTSGIGGCHNRDSGSASCGRPNKQHSNSMGLGSLGSSSGSVSRSRSDEQHSNSMVLANRCSGSVLHGRSDEQHSNSMALVNRGSGPILRGGPHEQHSDCVASPRIQHSSVQDGSSRGIMNERGVKDVEKAWKMLEKAKKMQGTRQRTNRK 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02272 413 ProSiteProfiles Zinc finger PHD-type profile. 129 178 IPR019787 -
Aip01g02272 413 Pfam PHD-finger 132 176 IPR019787 -
Aip01g02272 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 103 IPR013083 -
Aip01g02272 413 PANTHER PHD-FINGER FAMILY PROTEIN 9 193 - -
Aip01g02272 413 PANTHER PHD-FINGER FAMILY PROTEIN 360 406 - -
Aip01g02272 413 MobiDBLite consensus disorder prediction 14 32 - -
Aip01g02272 413 Pfam Ring finger domain 42 83 IPR001841 -
Aip01g02272 413 SMART PHD_3 131 176 IPR001965 -
Aip01g02272 413 SMART ring_2 42 82 IPR001841 -
Aip01g02272 413 Coils Coil 413 413 - -
Aip01g02272 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 201 IPR013083 -
Aip01g02272 413 ProSitePatterns Zinc finger RING-type signature. 60 69 IPR017907 -
Aip01g02272 413 SUPERFAMILY RING/U-box 37 95 - -
Aip01g02272 413 SUPERFAMILY FYVE/PHD zinc finger 124 177 IPR011011 -
Aip01g02272 413 MobiDBLite consensus disorder prediction 265 319 - -
Aip01g02272 413 MobiDBLite consensus disorder prediction 343 363 - -
Aip01g02272 413 MobiDBLite consensus disorder prediction 1 32 - -
Aip01g02272 413 ProSiteProfiles Zinc finger RING-type profile. 42 83 IPR001841 -
Aip01g02272 413 PANTHER HISTONE ACETYLTRANSFERASE 9 193 - -
Aip01g02272 413 PANTHER HISTONE ACETYLTRANSFERASE 360 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02272 Aip-Chr1 119803866 119806073 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02272 101 179 C2H2 Transcription Factor Family AT3G01460 33.750 4.39e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aip01g02272 PHD 5.2e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02272 - - ahf:112709160 758.059
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02272 01 119803866 119806073 Aip01g02272 01 119803866 119806073 ECH