Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02270 ATGATGAAGTCAGCAAAAGATTGTGCCCAAGATGAAGAGCTAGACAATGAAGAAACATACTTTCTTAAGAAAGAGTCCTCGAATCCTGAAAGAGCAGAACTCAGGGTGAAAGTTGATGGAAAGAGTAGTGATCAAAAGCCAAACACACCAAGGTCAAAACATTCAGCAACAGAACAGCGGAGGAGGAGCAAAATTAATGACAGATTCCAGATGCTACGAGAGTTAATTCCACACAGTGACCAAAAGAGAGACAAAGCATCTTTTTTGCTCGAGGTCATTGAGTATATTCATTTCTTACAAGAGAAGGTGCATAAGTATGAAGGTTCATTCCAAGGATGGAACCACGAGCCAGAAAAACTGATGCCATGGAGGAATAATGACAAGCCAGCAGAGAGTTTTGAAGCTTGTGGCACAAATAGCGGGTCAGGTCCATCACCAACCTTGCTCTTTGCTTCAAAGATCGATGAGAAAAATATCACTCTCTCCCCACCAATTACTGGTAGTTCTCAGAAACTAGAACCTGGCTTGAACACAGCAACTCCCTTCAAGAACATGGATCATCCTCCTGGAATAACAAACAACACTTTCCCAATTCCTATTTCTTCACCGCCAAACTTCTTCCCTCCTAGAAAAAGCATTGGTCTAGGCGAAATGCCTCACGTCACACATAGACTTCCATCTGATGCAGGGAATGGCATATACCAACCTTCAGTGGAGTGTCAGACTGTGACTGCTACTAATGAAAAGTTGAAAGAGAAAGAGCTCGCTATTGAAGGTGGTGCCATTAGCATATCAAGTGTATACTCAAAAGGGTTGTTGGATACACTTACACATGCACTACAGAGTTCGGGAGTGGATTTGTCACAGGCTAGCATCTCAGTGCAAATTGAGCTTCGTAAGCAAGAAAACATTATCAGACCAACTCTGCCAATGTCAATGTGTGGCATTAAGGGCGATGAAGTTCCTTCTAACAATCAAAGGATGATGCGCTCTAGAGTTGCTACCTCTGGGAAATCTGACCAACCAGTAAAGAAGCTAAAGTCTTGCAAAACCTAA 1056 0.4261 MMKSAKDCAQDEELDNEETYFLKKESSNPERAELRVKVDGKSSDQKPNTPRSKHSATEQRRRSKINDRFQMLRELIPHSDQKRDKASFLLEVIEYIHFLQEKVHKYEGSFQGWNHEPEKLMPWRNNDKPAESFEACGTNSGSGPSPTLLFASKIDEKNITLSPPITGSSQKLEPGLNTATPFKNMDHPPGITNNTFPIPISSPPNFFPPRKSIGLGEMPHVTHRLPSDAGNGIYQPSVECQTVTATNEKLKEKELAIEGGAISISSVYSKGLLDTLTHALQSSGVDLSQASISVQIELRKQENIIRPTLPMSMCGIKGDEVPSNNQRMMRSRVATSGKSDQPVKKLKSCKT 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02270 351 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 49 99 IPR011598 GO:0046983
Aip01g02270 351 CDD bHLH_AtBIM_like 48 124 - -
Aip01g02270 351 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 348 IPR044295 GO:0003700|GO:0006351|GO:0046983
Aip01g02270 351 MobiDBLite consensus disorder prediction 319 351 - -
Aip01g02270 351 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 121 IPR036638 GO:0046983
Aip01g02270 351 MobiDBLite consensus disorder prediction 324 342 - -
Aip01g02270 351 Gene3D - 46 120 IPR036638 GO:0046983
Aip01g02270 351 Pfam Helix-loop-helix DNA-binding domain 51 100 IPR011598 GO:0046983
Aip01g02270 351 SMART finulus 55 105 IPR011598 GO:0046983
Aip01g02270 351 PANTHER TRANSCRIPTION FACTOR BIM1 1 348 - -
Aip01g02270 351 MobiDBLite consensus disorder prediction 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02270 Aip-Chr1 119696560 119701107 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02270 1 301 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 46.732 8.19e-68 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip01g02270 HLH 2.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02270 - - adu:107468970 695.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02270 01 119696560 119701107 Aip01g02270 01 119696560 119701107 ECH