Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02258 ATGGGAAAAGAGTTTATATGTTTTTTGTTGATAGAAAAATTGGGATTCGAGGTTCCAACTCTGGTGCAAGCTCAAGCCATTCCTGTTATTCTCGCTGGCCGTCATGCACTTATTAATGCTGCCACAGGCACAGGGAAGACAGTTGCCTACTTAGCTCCACTTATTCATCAATTTTTCTCCATTTATTTGTCACAGACAGATAACAATTATGCATGCTTGTTACTGTCGTTGGTTCTTGTACCGACGCGTGAGCTATGTCTGCAGGTTTATGAAATTCTTCAAAAGCTATTGCATCGATTCCATTGGATTGTTCCCGGGTATGTTATGGGTGGTGAAAATAGATCAAAGGAGAAAGCTAGGCTACGCAAAGGCATATCAATTCTTATAGCAATACCTGGGCGCCTTTTAGATCATTTGAAGAATACACCATCATTCTTGTACACAAAATTGCGCTGGATAACTTTTGATGAAGCTGATAGGATTTTGGAATTAGGATTTGGACAAGATATACAGGAAATACTAGATCTTTTGGGTTCAAGAAAAGCAGCAAATGATTACAAGGAGAGTACAGTTCCAAGAAACTCTGAATTTCAAAGGCAGAATTTGCTTTTTTCTGCCACCTTTAATGAGAAAGTGAACCATCTTGCTAAAATAAGTTTACACAATCCAGTGATGATTGGTCTTGAGGGTAAAACAAGAAAACCAGTATCAACAATTGAAAGCATTGATCTTTCAGAGTCTGATGAAGATGACGAAGTCAAGTATTCCAGTAAAATGCCAACAGTTATAGATTATAAAATCCCCACACAGTTAATTCAGAGATACGTGAAAACAGTGCCTTGTGGTTCTCGGCTTGTTGTTCTTCTTTCAATTCTAAAGCATCTTTTTGAAAGAGACACTTCACAAAAGGTTGTGGTATTCTTTTCGACATGTGATACGGTAGACTTTCACCATTCGCTACTAAGTGAGTTCCACTTCTCGACTGATCCTCAAACAAAAGAAAGGGTCATACAAATGTTTCTTGGATGCCAAACTTTTCGATTGCATGGTAATATGGAACATGAAGACCGGAGATCTACTTTTCAGGCTTTTAAAACTGAGAAATCTGCTTTGCTTTTGTCCACTGATGTTTCTGCTAGAGGCCTGGATTTTCCAACGGTTCGATGCATCATACAGTATGATTCTCCTGGGGAAGCTACTGAATATGTGCACAGAGTTGGTAGAACTGCTCGTCTGGGTGAAAGGGGAGAGTCCTTGTTATTTCTGCAACTAGTTGAAATAGATTATTTACAGGACTTGGAGAAACATGGTGTTTCACTAGCGGAGTATCCTCTTCTCAAAGTGTTGGATAATTTTACATTACACGGACAGAACAAACACGTAAAGAAGTCTGTTTTCATCGACTTGCATCCTTGGGTCCTTTGTCTCCAGAAGGCACTTGAATCATTCATCATTTCCAAGCCCAAGATGGATGAACTTGCTAGGAAGGGATTTTGCTCTTGGGTCCGTGCTTACACAGCACATCGTGGTGAGCTGAAAAGAATATTTATGATCAAGAAACTTCACTTGGGGCACGTGGCCAAAAGCTTTGCGTTGAAACAACAACCGTCCTTAGTTGGACAATCCTTCCAAAAGCAAAATAAGAAGAGAAAGAGATTTGAGAAGAAAAGTGGGCTATCGAAAAAGAGAAAAGTTGCTAGAGTGACTTAA 1710 0.3953 MGKEFICFLLIEKLGFEVPTLVQAQAIPVILAGRHALINAATGTGKTVAYLAPLIHQFFSIYLSQTDNNYACLLLSLVLVPTRELCLQVYEILQKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILIAIPGRLLDHLKNTPSFLYTKLRWITFDEADRILELGFGQDIQEILDLLGSRKAANDYKESTVPRNSEFQRQNLLFSATFNEKVNHLAKISLHNPVMIGLEGKTRKPVSTIESIDLSESDEDDEVKYSSKMPTVIDYKIPTQLIQRYVKTVPCGSRLVVLLSILKHLFERDTSQKVVVFFSTCDTVDFHHSLLSEFHFSTDPQTKERVIQMFLGCQTFRLHGNMEHEDRRSTFQAFKTEKSALLLSTDVSARGLDFPTVRCIIQYDSPGEATEYVHRVGRTARLGERGESLLFLQLVEIDYLQDLEKHGVSLAEYPLLKVLDNFTLHGQNKHVKKSVFIDLHPWVLCLQKALESFIISKPKMDELARKGFCSWVRAYTAHRGELKRIFMIKKLHLGHVAKSFALKQQPSLVGQSFQKQNKKRKRFEKKSGLSKKRKVARVT 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02258 569 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 27 226 IPR014001 -
Aip01g02258 569 Gene3D - 8 229 IPR027417 -
Aip01g02258 569 Pfam Domain of unknown function (DUF4217) 477 537 IPR025313 -
Aip01g02258 569 PANTHER ATP-DEPENDENT RNA HELICASE DDX31-RELATED 20 567 - -
Aip01g02258 569 SMART ultradead3 15 242 IPR014001 -
Aip01g02258 569 MobiDBLite consensus disorder prediction 541 569 - -
Aip01g02258 569 SMART DUF4217_3 475 540 IPR025313 -
Aip01g02258 569 Pfam DEAD/DEAH box helicase 21 214 IPR011545 GO:0003676|GO:0005524
Aip01g02258 569 Gene3D - 271 565 IPR027417 -
Aip01g02258 569 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 291 460 IPR001650 -
Aip01g02258 569 Pfam Helicase conserved C-terminal domain 290 413 IPR001650 -
Aip01g02258 569 PANTHER RNA HELICASE 20 567 - -
Aip01g02258 569 CDD SF2_C_DEAD 271 422 - -
Aip01g02258 569 MobiDBLite consensus disorder prediction 545 569 - -
Aip01g02258 569 SMART helicmild6 331 413 IPR001650 -
Aip01g02258 569 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 76 434 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02258 Aip-Chr1 119263112 119268033 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02258 11 444 Eukaryotic Initiation Factors Gene Family AT1G72730 23.077 5.07e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02258 K14806 - gmx:100805157 864.759