Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02255 ATGGGAAGGGGAAGAGTGCAGTTGAAGAGGATCGAGAACAAGATTAATAGGCAAGTCACGTTCTCAAAGAGAAGATCTGGTTTGCTGAAGAAGGCAAACGAAATCTCAGTGCTATGCGATGCCGAAGTCGCACTCATCGTCTTCTCCACCAAAGGCAAGCTCTTCGAATATTCCAGCGATCCCTGTATGGAAAGGATTCTTGAACGGTATGAGAGGTACTCATATGCGGAGAAGCAACTCATTTCAAATGATCAGCAGCCGCCAAATGAAAACTGGATACTAGAACACGCAAAGCTCAAGGCTAGGGTGGAAGTTCTACACAGAAATCAAAGGAATTTTATGGGGGAAGGTCTCGATACCCTAAGTCTGAAAGAACTTCAGAATTTGGAACACCAACTTGAATCCGCTCTCAAGCACATTAGATCACGAAAGAACCAAGTCATGTATGAATCTATTTCAGAGCTTCAGAAAAAGGATAAGGCACTCCAGGAACAAAACAACGTGCTCGCCAAGAAGATAAAGGAAAAAGAGAAGGCACTGGCCCAGACTCAAACTCAAGAGGAGCAACTTGGCCTGCAAACTACTGGTGATGTGCCCTCTCTCCTTATAACCGAACCGTTGGAGTCCTTCAATAATATTGGAGGCAGTAGTACCCCTCAAGCACCTGGAGGTAGTGATGGATTATTATTAGGAGATAATGAAGAAAGTACTACACCAACTCAACCTAATAATAATAATAACCTTCTTCCTCCTTGGATGATTCGCCCTACAATAAATGAATAG 783 0.4342 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIVFSTKGKLFEYSSDPCMERILERYERYSYAEKQLISNDQQPPNENWILEHAKLKARVEVLHRNQRNFMGEGLDTLSLKELQNLEHQLESALKHIRSRKNQVMYESISELQKKDKALQEQNNVLAKKIKEKEKALAQTQTQEEQLGLQTTGDVPSLLITEPLESFNNIGGSSTPQAPGGSDGLLLGDNEESTTPTQPNNNNNLLPPWMIRPTINE 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02255 260 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aip01g02255 260 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aip01g02255 260 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aip01g02255 260 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 188 - -
Aip01g02255 260 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Aip01g02255 260 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aip01g02255 260 Coils Coil 123 146 - -
Aip01g02255 260 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aip01g02255 260 Coils Coil 152 193 - -
Aip01g02255 260 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Aip01g02255 260 Pfam K-box region 85 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aip01g02255 260 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Aip01g02255 260 MobiDBLite consensus disorder prediction 231 252 - -
Aip01g02255 260 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Aip01g02255 260 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL8 HOMOLOG 1 188 - -
Aip01g02255 260 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aip01g02255 260 MobiDBLite consensus disorder prediction 209 223 - -
Aip01g02255 260 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Aip01g02255 260 MobiDBLite consensus disorder prediction 209 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02255 Aip-Chr1 119233786 119240425 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02255 1 215 MADS-box Gene Family AT1G26310 62.222 2.85e-93 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aip01g02255 K-box 5.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02255 K09264 - gmx:100784742 323.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02255 01 119233786 119240425 Aip10g02825 10 120922545 120925254 ECH
Aip04g03473 04 129186396 129196675 Aip01g02255 01 119233786 119240425 ECH
Aip01g02255 01 119233786 119240425 Aip01g02255 01 119233786 119240425 ECH