Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02248 ATGGAATCTTCTTGGGATTATGTTACTGAAGAAGAAAAGGGGTATGTCTCCAACGATGCACTTTCTGCTGCACCTCCTCCTCCTCCTAGTACCCTTTTGAGAAGCAAAAGTTCCTTCCTTGGATGGGAACTGAAAACCCCATGTTCTAGCTTTGACAATCAATGTTTTGAAGAACTTGGTTTCCCTGAATTGTTGGGGAAACCATTGTTTAATGATCTAATTGGAGGTAGTGGACATGGTGGAAGAATCACAAGTAGTAGTAATAGTACTATTACAACTACTACTACTGTTGTGGACTCCAGTAGTGGCCGTGATTCCCTCATTGATTTGAAGCTTGGAAGATTTGCTGATCATGCTGATGTTAATGTTGCATCATTTTCCAAAGGAGCACCTGTTTTGTGTTCTTCTGTGTCGTCCACGGCCCCGAAGAGACCGCGAGGCTCTTTGGGTTTGCACTCGCAGACTGCTTACTGCCAAGTCTATGGCTGTAACAAGGATCTCAGCTCCTCTAAAGATTACCACAAGAGACACAAAGTTTGTGAGGTTCATTCCAAGACTGCCGTAGTTATAGTCAATGGCATTGAGCAAAGGTTTTGTCAGCAATGTAGTAGGTTTCATTTGCTGGCTGAATTCGATGATGGTAAGCGCAGCTGTCGCAAACGCCTTGCAGGACATAACGAGCGGCGAAGAAAACCACAAGCAGATAGCAGATTCCAGGGAACCATGCTATCATCGGCATCTTTTATCTCCTCGGATTCAGATAAATACGGAATGAGTAGCTTCTGGAAACCCGGTAAAGCAGAACACGGGTCCGATTTTTGGCATCCTCAGTCAAGATCTCTTTTCCCTTCATACAATGGAAAACAATTTCCCTTTCTTCATGAGAGTGGTGCTACACCCACTACTACTGAAAGCATCTTGTATGAAAACAATAACCAATATAAGCATGTCATTGCGGCCCAACATCCAGGGTCAAGACCACTATTTCAGAACAGCTCCTTAGGAAGTGACGACTTCAATCTTTTCGATACATCATCAACTGTTCAAGGATTGTCGGGAATTTCGGACTCGTGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCTTCAAGCCAGTCGTCCGGAATTCCCTTTGTTCCCCCCATGGTTAGTCCAAGCAGCCACAGCCATCCTTGCAGCATAAGTCAAGTCTCCGAAAAGATAGGAATGAGCTCGCAAACTTCTTCATGCCGAGTGTACGATAGGTTTCCATCAACGTTGAATCCTGCAAGTGGAAGCCAGCTTAGTCCTATACTTATATCAGACAATAACAATATTGTCAACTTAGAAATGGCAGACCGGATTTTCCAAGGTTCAGACTTTGTTAATGCTAGAGATCGCCTTTCATGTGAAGATGTTGCAACGATTGACTTGCTACAGCTGTCGTCGCAGCTTCAACGAGTCGAGCATCAAAGGCAGTCCTTGCAGGTTAAGCAAGAAAACGATTCTTCCTGCACTCTCCGGATTACTTAA 1518 0.4433 MESSWDYVTEEEKGYVSNDALSAAPPPPPSTLLRSKSSFLGWELKTPCSSFDNQCFEELGFPELLGKPLFNDLIGGSGHGGRITSSSNSTITTTTTVVDSSSGRDSLIDLKLGRFADHADVNVASFSKGAPVLCSSVSSTAPKRPRGSLGLHSQTAYCQVYGCNKDLSSSKDYHKRHKVCEVHSKTAVVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQADSRFQGTMLSSASFISSDSDKYGMSSFWKPGKAEHGSDFWHPQSRSLFPSYNGKQFPFLHESGATPTTTESILYENNNQYKHVIAAQHPGSRPLFQNSSLGSDDFNLFDTSSTVQGLSGISDSCCALSLLSSQSQNSSSQSSGIPFVPPMVSPSSHSHPCSISQVSEKIGMSSQTSSCRVYDRFPSTLNPASGSQLSPILISDNNNIVNLEMADRIFQGSDFVNARDRLSCEDVATIDLLQLSSQLQRVEHQRQSLQVKQENDSSCTLRIT 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02248 505 ProSiteProfiles Zinc finger SBP-type profile. 155 232 IPR004333 GO:0003677
Aip01g02248 505 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 39 505 IPR044817 GO:0003677
Aip01g02248 505 PANTHER 1 PROTEIN, PUTATIVE-RELATED 39 505 - -
Aip01g02248 505 Gene3D - 150 219 IPR036893 GO:0003677|GO:0005634
Aip01g02248 505 Pfam SBP domain 158 231 IPR004333 GO:0003677
Aip01g02248 505 SUPERFAMILY SBT domain 156 236 IPR036893 GO:0003677|GO:0005634
Aip01g02248 505 Coils Coil 473 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02248 Aip-Chr1 118988723 118992300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02248 108 232 SBP-box Gene Family AT1G69170 63.200 2.81e-46 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Aip01g02248 SBP 5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02248 - - adu:107468861 888.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02248 01 118988723 118992300 Aip10g02834 10 121175781 121179965 ECH
Aip01g02248 01 118988723 118992300 Aip01g02248 01 118988723 118992300 ECH