Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02242 ATGCTTGGATGGCGTCCTCATCGCTCATCGTTTGTGTTGTTTGTGTATGCACTTAAAGTGACGGCGGCCTTCAACTTCTGGATCCCTGATAACGGCGGAGGTGTAATGCATGTCGTATTTTTGGAAGTTTGTGTATGTAGTAGGCAAGTGGAGGCTGTGAGGATGTTGGAAGCATGTTGGATAGTAGATGAGGTGGTAACAATGGCATCAAGTAGCAAGTTTTGCAAGGATTCGTGTATGTGGAATGAGCCTCTTGCGGACAACTGGATGGAGGGCAAGGCTGGTGTGTCGAATCCACAGAACGCATTCCACATAATGCCAGCTGGTAGCGAAATGTTTGTGTTATTCTTTCAGGACACAATGTATGATACAAGAGTGGAGGAAGATGCTGAGTTATCCGATTGGGAGGGGAGGGGGGCTTCAATGTTGCCCGTTTTGTTGGGTTTGGATGGGTTGCAAGCAGAAGATGTTCTTGAAATGGAGTTTTCTTCACCTCAAGAGGCAAGCGGCTTCTATAACAATTACAGCCGACTAAAGGGCTTTGCATCTAGGCGAGGCAAGACGGTTAGAAACACTGCCGGAGAGATAGTGCGGTACACGTTCGTTTGTAATAGGCAGGGATTTCGAGAGAAGAAATGGTTGGAAAAGGTTGATCGCAAAAGGGAGCATAAGGTTGTAACCCGATGCGGATGCACGGCGGAGATGAGGATAAAGCGGAAAGAGGGTAGTGGGAGGTGGTATGTGTCGCGTTTTGTCGAGGAGCATAACCACGAACTTGCGTATGGGAAGCTTGTTGGATTATCTGCGTCACACAGGAAGATATCTGAGGTAGAAGTTGCTCAGCTAACAAGCATGAGGGAGATTGGGATTAGCATACCTAAGATTTATGAGTCATTCGCAGCACAACTAGGGGGTTTTAATCTGGTAACATTCACAAAACAAGATATGTATAATGAGATACAGAAACAGAGAGGTCTACAAGGCGGAGACGTAACTGCAGCTATTAGTTACTTGGATGGTCTGGCACGCATCGATGGGAAAATGTTTTGGCGGTACAAGTTGGGGTCAGGGCAACAGCTATGCAACTTGTTTTGGAGCGATGGTCGTTGTCAGGAAGATTATGGGATATTCGGCGATGTGCTAGCATTCGACGCTACTTACGGCCGTAACAAGTACAACCTACCGGTTGTAGTCTTTTCCGGAGTAAACCACCACAACCAGACATGCGTATTCGGAACAGCAATGGTCTCATGCGAATCGCAGGAGTCATATATTTGGGTTCTTCGCCAGTTTCTGGAATGCATGCAAGGTAAGGCACCGCATTCCGTCATCACGGATGGAGACCCGGCCATGCGGATAGCAATCCAGTCCGTTTTTCCACACACACATCATCGGTTGTGTGCCTGGCATCTGTTGAGGAACGCGACTGCTAACATAAGCGACCCGAGATTCACACAAATGTTTAGACACTGCATGCTGGCAGATATTGAAATCGAGGAGTTCGAAGCGCATTGGGAATTAATGGTCAATGAGTGCGGTGTTAGGGAGGTTGAGTGGGTTAAGGAGTTGTACGCCAAAAAGCACGCTTGGGCAACCGCATACATTCGTGGTAGATTTTTTGCTGGAGTACGGACAACCTCTAGGTGCGAGTCACTACATGCCAAACTAGGGAGGTTTGTTGAGAGCAGGTACGGGGTGTTAGAATTTGTCAGAAATTTTCAAAGGTGTGTGGACTTTCTTCGTGACACCGAGGACGAGCTAGAGTTTCGTTCATGGTACGGAACACCTGTGCTACAAACGGAGTTTGTTGAGCTGGAAAAGTCTGGATGGAGTATGTTCACCCGCGAAATGTTTCTCAGATTCCGGGATAGCCTGAAACGGTGTGTTCGTGTTAGAATATGCGAACTTAATGACAGTGAGAACCCTCATGCATATACTCTCCAGAAGTATCGGAGGCCTGGGATGAATTGGAAGGTATATAGGGACCATATCTCGAACAGATTTAGTTGCACCTGCATGCGTATGGAGTCGTTTGGCATTCCTTGTGTGCATATCCTTTCCGTGTGTGTAAGTCTAGACTTGGTGGAAATCCCCAAAAGCCTTGTCCTCCGAAGATGGTCTAAGGCAGCCAAATTGGAGATCCATAACCAATGTGTTCAGCAACATACTGCTAACCCAAGTGTGACCTATAGGACACGATTGGGTGCTTTCTCCCAGCTGTGTAAGCGCTTAGGGCGCGTTGCTTGCATGAGTGATGAAGACTTCAAACTTTACTCAAAGAAGCTTTTGAGCGATGCTCTGTTCCTTGAAATAAAGTACGGGTTAAGACCATCAACGGATGATATCACAACAGCAAATGATTGCGGGGTGAAGGACCCTATTCGTGTCAGAACAAAAGGCACGGGTCGGATGAGCCAAGGAGGCGGTTCTGCGTCGAAAACGAAAAGAAAGTGCAGCACATGCGGGAAGCTAGGACACCGGAGGACTAGATGCCCCAACGGAGCCGGGCAAGCGCCAACGAGGAACAATGAATCACATGGTGGAAGAAATAAACGCAAGCGATCTAAGGTACCCGTCGTTGTCCCGGATAATTGTCACGCTGAAAATGCATTTCAAGCCGGAAGCGACAAACGGGATCAATTTTCGCTTGCAGACCCATGA 2661 0.4773 MLGWRPHRSSFVLFVYALKVTAAFNFWIPDNGGGVMHVVFLEVCVCSRQVEAVRMLEACWIVDEVVTMASSSKFCKDSCMWNEPLADNWMEGKAGVSNPQNAFHIMPAGSEMFVLFFQDTMYDTRVEEDAELSDWEGRGASMLPVLLGLDGLQAEDVLEMEFSSPQEASGFYNNYSRLKGFASRRGKTVRNTAGEIVRYTFVCNRQGFREKKWLEKVDRKREHKVVTRCGCTAEMRIKRKEGSGRWYVSRFVEEHNHELAYGKLVGLSASHRKISEVEVAQLTSMREIGISIPKIYESFAAQLGGFNLVTFTKQDMYNEIQKQRGLQGGDVTAAISYLDGLARIDGKMFWRYKLGSGQQLCNLFWSDGRCQEDYGIFGDVLAFDATYGRNKYNLPVVVFSGVNHHNQTCVFGTAMVSCESQESYIWVLRQFLECMQGKAPHSVITDGDPAMRIAIQSVFPHTHHRLCAWHLLRNATANISDPRFTQMFRHCMLADIEIEEFEAHWELMVNECGVREVEWVKELYAKKHAWATAYIRGRFFAGVRTTSRCESLHAKLGRFVESRYGVLEFVRNFQRCVDFLRDTEDELEFRSWYGTPVLQTEFVELEKSGWSMFTREMFLRFRDSLKRCVRVRICELNDSENPHAYTLQKYRRPGMNWKVYRDHISNRFSCTCMRMESFGIPCVHILSVCVSLDLVEIPKSLVLRRWSKAAKLEIHNQCVQQHTANPSVTYRTRLGAFSQLCKRLGRVACMSDEDFKLYSKKLLSDALFLEIKYGLRPSTDDITTANDCGVKDPIRVRTKGTGRMSQGGGSASKTKRKCSTCGKLGHRRTRCPNGAGQAPTRNNESHGGRNKRKRSKVPVVVPDNCHAENAFQAGSDKRDQFSLADP 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02242 886 Pfam MULE transposase domain 380 474 IPR018289 -
Aip01g02242 886 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 156 731 IPR031052 GO:0006355
Aip01g02242 886 PANTHER OS02G0262500 PROTEIN 156 731 - -
Aip01g02242 886 SMART 26again6 668 695 IPR006564 GO:0008270
Aip01g02242 886 MobiDBLite consensus disorder prediction 803 817 - -
Aip01g02242 886 ProSiteProfiles Zinc finger SWIM-type profile. 660 693 IPR007527 GO:0008270
Aip01g02242 886 ProSiteProfiles Zinc finger CCHC-type profile. 816 833 IPR001878 GO:0003676|GO:0008270
Aip01g02242 886 SUPERFAMILY Retrovirus zinc finger-like domains 797 837 IPR036875 GO:0003676|GO:0008270
Aip01g02242 886 MobiDBLite consensus disorder prediction 793 863 - -
Aip01g02242 886 Pfam FAR1 DNA-binding domain 171 260 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02242 Aip-Chr1 118823900 118828252 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip01g02242 MULE 1e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02242 - - aip:107611673 1570.06