Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02239 ATGAACGGTTTAAGAGGTGAAAGAGCTCCTCTCTTGGAAGCTGAGCGCGGCGGAAGGGGAAAAAGGGATGGAGCTTCAGAGGACCAAGTCTCAGACCTTGAGCACGGTGACGGAGTGCCGGCAGCGAATGTGGGATTCTTCCGAGTGTTTTCACTTGCAAAACCAGAGGCTGGAAATTTGGTGATTGGTACAGGGGCTTTGTTGATTGCGGCCACATCAAGTATCTTAGTTCAAAAATATGGTGGCAAGATAATTGACATTGTGTCAGGAGATCTAAGAACTCAAGAGCAGAGAGATGCGGCTTTAAATGCTGTCAAGAACACTATTATAGAGATCTTTCTAATTGTGTTTCTTGGTTCAATTTGCACAGCACTTCGAGCTTGGCTATTTTCTTCTGCTAGTGAAAGAGTTGTCGCACGGCTAAGAAAGGATTTGTTCAGTCACCTTGTAAACCAGGAGATTGCTTTCTTCGATGTTACTCGAACGGGAGAACTCTTAAGTAGGTTGTCGGAAGATACACAGATCATAAAGAATGCCGCAACTACCAATCTTTCTGAGGCCATGAGGAACCTAGCAACAGCACTTATGGGTCTCAGCTTCATGTTTGCAACATCTTGGAAGTTAACATTGTTGGCTTTGGCTGTTGTGCCTGTAATTTCTGTTGCTGTCCGTAAATTTGGGCGTTTCCTGCGTGAACTATCTCACAAAACTCAAGCTGCAGCTGCAGTAGCATCTTCAATTGCTGAGGAATCATTTGGTGCCATAAGAACAGTAAGATCTTTTGCCCAAGAAGATTATGAAATTTCACGCTACTCTGAGAAAGTTAGTGAGACACTCAGCCTTGGCCTTAAGCAAGCTAAAGTCGTTGGACTCTTTTCTGGAGGCCTTAATGCAGCGTCCACACTTTCTGTTATCGTAGTAGTTATATATGGAGCTAGCTTGACAATCAAGGGTCACATGACCTCGGGTGATCTCACGTCTTTCATTCTTTATAGTCTTTCAGTGGGATCTTCTATATCTGGCTTGTCGGGATTGTATACAGTAGTTATGAAAGCTGCAGGTGCTAGCCGAAGGGTATTTCAACTTTTGGATCGTGAGTCGTCAATGCCTAAGCCAGGAAATAAGTGTCCTCTTGGTGATCAAGATGGGGAAGTGGAACTCGATGATGTATGGTTTTCCTATCCGTCGCGCCCTAATCACATGGTGCTCAAGGGCATTACAATTAAACTGCTGCCTGGCTCAAAAGTTGCTCTTGTTGGTCCAAGTGGTGGCGGGAAGACAACAATAGCTAACTTGATTGAAAGATTTTATGATCCAAGCAAAGGAAAGATTTTGCTGAATGGGGTTCCTCTGGTAGAAATATCTCACAAGCATTTGCACAGAAAGATCAGTATAGTGAGTCAGGAGCCTACATTGTTCAACTGTTCCATAGAGGAGAACATAGCCTATGGTTTTGACGGCAAAGTCGACGAAGTTGACATAGAAAATGCGGCTAAAATGGCCAATGCACATGAATTTATATCAAAGTTCCCAGAGAAATACAAGACCTTTGTTGGAGAGCGTGGGGTACGGCTTTCGGGAGGGCAGAAACAGAGAATTGCGATTGCTAGAGCCCTGCTCATGGATCCAAAAATTCTCCTCCTGGATGAAGCCACTAGTGCCCTGGATGCCGAGAGCGAGTACCTAGTGCAGGATGCTATGGATTCTCTAATGAAGGGAAGAACTGTTCTAGTCATTGCTCATAGATTATCAACTGTCAAAACTGCCGATACTGTAGCGGTTATCTCGGATGGCCAAGTAGTTGAGAGTGGCACGCACGACGAGCTTCTCGGCAAGAATGGTGTCTATACTGCATTAGTCAGGAGACAACTGCAGACAGCAAAAACCGAAAATGTAGTTTAG 1902 0.4464 MNGLRGERAPLLEAERGGRGKRDGASEDQVSDLEHGDGVPAANVGFFRVFSLAKPEAGNLVIGTGALLIAATSSILVQKYGGKIIDIVSGDLRTQEQRDAALNAVKNTIIEIFLIVFLGSICTALRAWLFSSASERVVARLRKDLFSHLVNQEIAFFDVTRTGELLSRLSEDTQIIKNAATTNLSEAMRNLATALMGLSFMFATSWKLTLLALAVVPVISVAVRKFGRFLRELSHKTQAAAAVASSIAEESFGAIRTVRSFAQEDYEISRYSEKVSETLSLGLKQAKVVGLFSGGLNAASTLSVIVVVIYGASLTIKGHMTSGDLTSFILYSLSVGSSISGLSGLYTVVMKAAGASRRVFQLLDRESSMPKPGNKCPLGDQDGEVELDDVWFSYPSRPNHMVLKGITIKLLPGSKVALVGPSGGGKTTIANLIERFYDPSKGKILLNGVPLVEISHKHLHRKISIVSQEPTLFNCSIEENIAYGFDGKVDEVDIENAAKMANAHEFISKFPEKYKTFVGERGVRLSGGQKQRIAIARALLMDPKILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVKTADTVAVISDGQVVESGTHDELLGKNGVYTALVRRQLQTAKTENVV 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02239 633 Pfam ABC transporter transmembrane region 61 333 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip01g02239 633 SUPERFAMILY ABC transporter transmembrane region 48 366 IPR036640 GO:0005524|GO:0016021
Aip01g02239 633 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 3 627 IPR039421 -
Aip01g02239 633 CDD ABC_MTABC3_MDL1_MDL2 385 623 - -
Aip01g02239 633 ProSitePatterns ABC transporters family signature. 525 539 IPR017871 GO:0005524
Aip01g02239 633 CDD ABC_6TM_AtABCB27_like 63 359 - -
Aip01g02239 633 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 376 623 IPR027417 -
Aip01g02239 633 Gene3D ABC transporter type 1, transmembrane domain 44 372 IPR036640 GO:0005524|GO:0016021
Aip01g02239 633 MobiDBLite consensus disorder prediction 1 36 - -
Aip01g02239 633 Gene3D - 379 628 IPR027417 -
Aip01g02239 633 MobiDBLite consensus disorder prediction 9 34 - -
Aip01g02239 633 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 61 351 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip01g02239 633 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 385 622 IPR003439 GO:0005524
Aip01g02239 633 PANTHER ABC TRANSPORTER B FAMILY MEMBER 25 3 627 - -
Aip01g02239 633 Pfam ABC transporter 403 553 IPR003439 GO:0005524
Aip01g02239 633 SMART AAA_5 412 606 IPR003593 -
Aip01g02239 633 PIRSF ABC_prm/ATPase_B 15 633 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02239 Aip-Chr1 118723809 118729006 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02239 113 623 Calmodulin-binding Proteins AT2G36910 40.462 1.12e-106 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02239 - - var:108320153 1088.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02239 01 118723809 118729006 Aip01g02239 01 118723809 118729006 ECH