Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02231 ATGCTTCACTTTCAAGAGAGGAACTTTTCTCAAAAGATCAATCTTTCGTTTGTCTCACCAGATATTCCGTCAACAACTGTTGGCGATGCGACCCAAACTAGTCAACAAACTGGCAGAAGCTCGTCGATTGTGGCATCGGCTTCAGTTCAACAAGCTTTCAACAGCTACAAGACGGTAGACGACCGTAGTATCAATGTCCACATCACCGGTCATGGTTACATCACGCTCCAATACATCTCAAATATGATCATCCACAACATTCACGTCCACTGTTGCAAGCCCTCTAGCAACATCAACATAGGAGCCTCTTCGACCCACATGGGGTGGAAGGGAGTCTCTAACGGTGACGGAATCTCCATTTTCGGGTCATGCAAGATCTAG 381 0.4646 MLHFQERNFSQKINLSFVSPDIPSTTVGDATQTSQQTGRSSSIVASASVQQAFNSYKTVDDRSINVHITGHGYITLQYISNMIIHNIHVHCCKPSSNINIGASSTHMGWKGVSNGDGISIFGSCKI 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02231 126 SUPERFAMILY Pectin lyase-like 21 123 IPR011050 -
Aip01g02231 126 PANTHER PECTATE LYASE 53 126 - -
Aip01g02231 126 Gene3D - 9 126 IPR012334 -
Aip01g02231 126 PANTHER PECTATE LYASE 18-RELATED 53 126 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02231 Aip-Chr1 118123203 118124286 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02231 54 126 Polysaccharide Lyase AT1G04680 49.315 1.15e-21 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02231 K01728 - ahf:112778492 124.02