Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02228 ATGGCGAAATCCGTGAGCCCCGACGCCATTTCCACTCTGCTTGCAAATCCAACACCGGATTCCTCCTCTGATCTTCCCGAAATCGTTGTGCAAGTCCTCGATCTCAAGCAAAGTGGCAACAGATACATGTTTAGTGCTAGTGATGGAAAATTGAAGCTGAGGGCGATTTTGCCCTCGAGTCAGTACTCTGATGTGCTCTCTGGCAAGATTCAGAACCTCGGCCTTATTCGAATCCTTGATTACACTCTCAATGATATCCCCAACAAATCTGAAAAGTATCTTATTGTTACCAAATGCGAACCTGTGTCTCCTGCTCTTGAATCAGAGATAAAGAGCGAGGTGAAAAATGAAGGTGGTGGCATTGTTCTGAAGCCGAAGCAAGACAGTGCGGTCAAGATTGAAGGTGGGATTGTGTTGAAGCCAAAGCAGGAAGTGGTGTCAAAATCTGCTGCTCAGATTGTGCATGAACAGCATAGAAATGTTGCACCTGCTGCGAGAATGGCCATGACGCGTAGGGTGCGTCCTCTTGTTTCATTGAACCCTTATCAGGGTAATTGGACTATCAAGGTTAGTGTTACGAGCAAAGGGAACATGCGCACCTATAAGAATGCTCGAGGAGAAGGTTGTGTCTTTAATGTGGAGTTGACAGATGAAGATGGCACACAGATTCAAGCAACCATGTTTAATGATGCTGCAAGGAAGTTCTATGACAAGTTTGTTTTGGGAAAGGTTTACTACATATCAAAGGGTACTTTGAAAGTTGCTAACAAGCAGTTCAAAACTGTACAAAATGACTATGAAATGACACTGAATGAGAATTCTGAGGTAGAGGAAGCTGCCAATGAAGCAAGTTTTGTTCCTGAAACAAAATTCAGCTTTGTTCCAATTGATCAGTTGGGTCCTTATGTCAACAAATCTGAACTTGTTGATGTTGTTGGAGTTGTTCAGAATGTATCTCCAACTATGAGCATAAGAAGGAAGAGCAACAATGAAACTATTCCAAAGCGTGACATTACTATTGCTGATGAAACGAAGAAGACAGTAGTGGTGTCACTGTGGAATGATCTCGCAACTAACATAGGTCAAGAGTTGCTGGACATGGCTGATAAATCTCCAGTAGTTGCAATTAAGTCTCTTCGGGTTGGGGATTTCCAAGGTGTTTCTTTGTCAGCTATAAGCAAAAGTGTAATTAAGATTGATCCAGAGATACCTGAAGCAAAGAAACTTAGATGCTGGTATGACTCTGAAGGCAAAGATGCTACAATGGCTTCTGTTGGCTCTGGCTCGAGTCCTTCATCCATGAATGGAAGTAGATCTGTGTACTCTGATCGTGTTTCACTTTCTTACATAACTTCGAACCTGTCATTGGGAGAAGACAAGCCTGCATTTTTCAGCCTTAGAGGATACATAAGCTTCATAAAGCCAGATCAAGCAATGTGGTACCGTGCTTGCAAAACTTGCAACAAGAAAGTCACTGAGAGCATTGGTGCTGGGTATTGGTGTGAAGGTTGCCAGAAAAATGATGAACAATGTAGTTTAAGATACATTATGGTTGTAAAAGTTGCTGATGAAAGTGGGGAGGCTTATGTCTCAGTCTTCAATGAAGAAGCTGAGAAGATTGTTGGGTGCTCTGCTGATGAACTAGACACCTTAAAATCTCAGGAGGGAGAAGATAACCCTTTTCAACTGAAACTGAAACAAGCTACTTGGGTTCCTCATCTTTTCCGGGTTAGCGTTTCTCAAAACGAGTATAACAATGAGAAGAGGCAAAGGATCACAGCCAAGACCGTTGTTCCTGTTGACTTTGCTGCTGAGTCAAGACTTCTCTTGGAAGATATATCAAAGATGAGAGCTTCACAATAA 1863 0.424 MAKSVSPDAISTLLANPTPDSSSDLPEIVVQVLDLKQSGNRYMFSASDGKLKLRAILPSSQYSDVLSGKIQNLGLIRILDYTLNDIPNKSEKYLIVTKCEPVSPALESEIKSEVKNEGGGIVLKPKQDSAVKIEGGIVLKPKQEVVSKSAAQIVHEQHRNVAPAARMAMTRRVRPLVSLNPYQGNWTIKVSVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNDAARKFYDKFVLGKVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEAANEASFVPETKFSFVPIDQLGPYVNKSELVDVVGVVQNVSPTMSIRRKSNNETIPKRDITIADETKKTVVVSLWNDLATNIGQELLDMADKSPVVAIKSLRVGDFQGVSLSAISKSVIKIDPEIPEAKKLRCWYDSEGKDATMASVGSGSSPSSMNGSRSVYSDRVSLSYITSNLSLGEDKPAFFSLRGYISFIKPDQAMWYRACKTCNKKVTESIGAGYWCEGCQKNDEQCSLRYIMVVKVADESGEAYVSVFNEEAEKIVGCSADELDTLKSQEGEDNPFQLKLKQATWVPHLFRVSVSQNEYNNEKRQRITAKTVVPVDFAAESRLLLEDISKMRASQ 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02228 620 SUPERFAMILY Nucleic acid-binding proteins 174 282 IPR012340 -
Aip01g02228 620 SUPERFAMILY Nucleic acid-binding proteins 291 420 IPR012340 -
Aip01g02228 620 PANTHER REPLICATION FACTOR A 1, RFA1 5 614 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip01g02228 620 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 3 615 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip01g02228 620 CDD RPA1_DBD_B 319 414 - -
Aip01g02228 620 Pfam Replication factor-A C terminal domain 463 609 IPR013955 -
Aip01g02228 620 Gene3D - 4 113 IPR012340 -
Aip01g02228 620 Pfam Replication factor-A protein 1, N-terminal domain 5 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Aip01g02228 620 Pfam OB-fold nucleic acid binding domain 186 272 IPR004365 GO:0003676
Aip01g02228 620 SUPERFAMILY Nucleic acid-binding proteins 442 616 IPR012340 -
Aip01g02228 620 Pfam Replication protein A OB domain 303 400 IPR031657 -
Aip01g02228 620 CDD RPA1_DBD_C 450 615 IPR013955 -
Aip01g02228 620 CDD RPA1_DBD_A 175 278 - -
Aip01g02228 620 Gene3D - 172 281 IPR012340 -
Aip01g02228 620 Gene3D - 286 426 IPR012340 -
Aip01g02228 620 Gene3D - 427 616 IPR012340 -
Aip01g02228 620 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED 5 614 - -
Aip01g02228 620 SUPERFAMILY Nucleic acid-binding proteins 1 106 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02228 Aip-Chr1 117674698 117678047 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02228 1 620 Core DNA Replication Machinery Family AT5G08020 71.014 0.0 935
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02228 K07466 - qsu:112017680 990.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02228 01 117674698 117678047 Aip01g02228 01 117674698 117678047 ECH