Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02220 ATGAAGGAACAAAACAGAACAAATCAACAAAATAGAAAAAACCCAAATAAAACTCAGAACTCAGAACCAAGGGCAAGGAGGAGGCTTACCTCAATTGATGAGCATGAGCTCCGGCGAGCCACCAACGAAAGAAGAAGAGAACCGAAAAAGAGAGAAGACAGAGTCGCGAATGGGAGGTTGAGGCAGAGAGACAGAGTCTCGAATCAAAGTGAAGACTATAGACTCGAAGAGGTTCTCGGCCTCCCCCGTGACTGCACTCCGGAGGAGATCCGCTCCGCCTACCGCCGCCTAGCCCTGCAGCGCCACCCCGACAAGCTGGTCCAATCAGGTATCTCCCAATCGGAAGCCACTGCGCAGTTTCAGGAGCTTCAGCACGCCTACGAGGTCCTCTCTGATCCCAAAGAACGCTCCTGGTACGACTCTCACCGCTCTCAGATCCTCTTCTCCGATCCCGACACCCTCCGCAACTCCTCCGTCCCCGACCTCTTCTCGTTTTTCTCCAATACCGTCTTCTCCGGCTACTCCGATTCCGGTAGAGGCTTCTACAAGGTGTATTCTGATGTTTTCGATAAGATTCACGCTAATGAGATCAATTTCGTAAAGAATTTAGGGTTAGGTGTTGATTCCATTAGACAAGCTCCTGTTATGGGTAATTTAGATAGCCCTTACGAGCAGGTTACTGCGTTTTATGGTTATTGGTTAGGGTTTTCGACTGTTATGGATTTTTGCTGGGTTGATGAGTATGATGTTTCGGCCGGTCCGAACCGGCGGTCGCGGCGGCTTATGGAGGAAGAAAATAACAAGGTAAGGAAGAAGGCGAGGAGGGAGTACAATGATACTGTGAGGAGATTGGCTGAGTTTGTGAAGAAGAGGGATAAGAGGGTGATTGATATGAAGATGAAGAAGGAGAAGGAGGAGTTGAAGCGGAAGGAGGAGCAGAAGGAGAAGAAGAAAAGGTTGGAAAAGGAGAGGAGGGAGAGGGCAATGGCATACGAGGAGCCAGAGTGGGCGAAGGTGGATGAGGGCGAGGACGGGGAGGATGATTTGTGGTTTGAGGAGGCAGAGGAGGGGGGGAAGAAGGGTGGTGAGAAGGAGTTTTATTGTGTGTTGTGTGGGAAGAAGTTCAAGAGTGAGAAGCAGTGGAAGAACCATGAGCAGTCCAAGAAGCATAAGGAGAAGGTTGCTGAGTTTAGGGATTCGATTGAGGATGAGGATGAGGAGGTTGCTATGGACGATTTGGAGAGTGAGATTGAGGTGGAAGGAAGAGAAGAGAAGGAAGGGTTGGAGAGTGAGGAGGATGCTGATCACGTGGTTGAGGATTTGGAGGAGAGGATTAGAGATAGTCTTAATGTTGCAGAGGAGAGCACTAGAAATGGAGTCGAGCCTGATGATGATGACGAGGAAGAATTTTATGATGCTTCACATGAAAAGGAAGGCAATGTGGTTAGTGTGTCTGTAGATGGTGATGATGATGATGATGAAATTGGTGCTCTTGAAGCAATGATTGCAGGTCACAAGAGCAGAAAGCCACATGCTTCAACACGCAAGCCCAATGCCCCAGTGCCTCCAACTCAAATTGAGAATGAGGATGATGGGGTTGGCCCTATGGAATACAAAAACCGGAAGGGCGCAAGAAAGAAACGCGGATCCAAGAAAGAAAAGGGTAGGAAAAATCCAGAAGAATCCCGCACAGCAGCCGTCAATGGCGATGAAGAGCATAATAACAACAACGATGATGGGAATGGCAATTCTCATGCAGAGGAGTCTTCCTTCCAATTTAACGTGGAGAATGTGATTAATGGTAAAGAGAACGGGCATGATGGTAGAGATAAGACTTCAAATAAACCAGCTGATAAGAGAGGAGATGCAAAGGACACAAAATCCAAAGCTAAAACTTCATCAAAAGGAAGAAAAGCCAAGGGTGCGTCAAAGAATCATGGCAATACTTGCGAGACCTGTGGAGAGGAGTTTGAGTCAAGGAATAAATTACATAAACATCTTGGCGATTCTGGGCATGCAAAAATAAAAGGTAGATAG 2037 0.4757 MKEQNRTNQQNRKNPNKTQNSEPRARRRLTSIDEHELRRATNERRREPKKREDRVANGRLRQRDRVSNQSEDYRLEEVLGLPRDCTPEEIRSAYRRLALQRHPDKLVQSGISQSEATAQFQELQHAYEVLSDPKERSWYDSHRSQILFSDPDTLRNSSVPDLFSFFSNTVFSGYSDSGRGFYKVYSDVFDKIHANEINFVKNLGLGVDSIRQAPVMGNLDSPYEQVTAFYGYWLGFSTVMDFCWVDEYDVSAGPNRRSRRLMEEENNKVRKKARREYNDTVRRLAEFVKKRDKRVIDMKMKKEKEELKRKEEQKEKKKRLEKERRERAMAYEEPEWAKVDEGEDGEDDLWFEEAEEGGKKGGEKEFYCVLCGKKFKSEKQWKNHEQSKKHKEKVAEFRDSIEDEDEEVAMDDLESEIEVEGREEKEGLESEEDADHVVEDLEERIRDSLNVAEESTRNGVEPDDDDEEEFYDASHEKEGNVVSVSVDGDDDDDEIGALEAMIAGHKSRKPHASTRKPNAPVPPTQIENEDDGVGPMEYKNRKGARKKRGSKKEKGRKNPEESRTAAVNGDEEHNNNNDDGNGNSHAEESSFQFNVENVINGKENGHDGRDKTSNKPADKRGDAKDTKSKAKTSSKGRKAKGASKNHGNTCETCGEEFESRNKLHKHLGDSGHAKIKGR 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02220 678 PRINTS DnaJ domain signature 94 109 IPR001623 -
Aip01g02220 678 PRINTS DnaJ domain signature 76 94 IPR001623 -
Aip01g02220 678 PRINTS DnaJ domain signature 115 135 IPR001623 -
Aip01g02220 678 SMART dnaj_3 73 135 IPR001623 -
Aip01g02220 678 MobiDBLite consensus disorder prediction 305 326 - -
Aip01g02220 678 Pfam DnaJ domain 77 140 IPR001623 -
Aip01g02220 678 SUPERFAMILY beta-beta-alpha zinc fingers 354 412 IPR036236 -
Aip01g02220 678 SMART ZnF_U1_5 363 397 IPR003604 GO:0003676|GO:0008270
Aip01g02220 678 MobiDBLite consensus disorder prediction 579 599 - -
Aip01g02220 678 MobiDBLite consensus disorder prediction 19 70 - -
Aip01g02220 678 ProSiteProfiles dnaJ domain profile. 74 143 IPR001623 -
Aip01g02220 678 MobiDBLite consensus disorder prediction 399 419 - -
Aip01g02220 678 Coils Coil 387 407 - -
Aip01g02220 678 ProSitePatterns Zinc finger C2H2 type domain signature. 650 672 IPR013087 -
Aip01g02220 678 MobiDBLite consensus disorder prediction 602 632 - -
Aip01g02220 678 Coils Coil 438 458 - -
Aip01g02220 678 MobiDBLite consensus disorder prediction 1 70 - -
Aip01g02220 678 Pfam Zinc-finger double-stranded RNA-binding 366 391 IPR022755 -
Aip01g02220 678 SMART c2h2final6 648 672 IPR013087 -
Aip01g02220 678 SMART c2h2final6 366 390 IPR013087 -
Aip01g02220 678 Gene3D DnaJ domain 55 153 IPR036869 -
Aip01g02220 678 MobiDBLite consensus disorder prediction 651 678 - -
Aip01g02220 678 ProSiteProfiles Zinc finger C2H2 type domain profile. 366 395 IPR013087 -
Aip01g02220 678 ProSitePatterns Nt-dnaJ domain signature. 120 139 IPR018253 -
Aip01g02220 678 Coils Coil 293 333 - -
Aip01g02220 678 MobiDBLite consensus disorder prediction 554 578 - -
Aip01g02220 678 Gene3D Classic Zinc Finger 354 412 - -
Aip01g02220 678 MobiDBLite consensus disorder prediction 381 678 - -
Aip01g02220 678 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 73 678 IPR044648 -
Aip01g02220 678 ProSitePatterns Zinc finger C2H2 type domain signature. 368 390 IPR013087 -
Aip01g02220 678 CDD DnaJ 77 132 IPR001623 -
Aip01g02220 678 SUPERFAMILY Chaperone J-domain 51 139 IPR036869 -
Aip01g02220 678 MobiDBLite consensus disorder prediction 381 398 - -
Aip01g02220 678 ProSiteProfiles Zinc finger C2H2 type domain profile. 648 677 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02220 Aip-Chr1 117326430 117331497 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02220 77 678 C2H2 Transcription Factor Family AT1G74250 48.200 5.75e-175 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip01g02220 DnaJ 1.3e-19 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02220 K09506 - gmx:100788305 748.429