Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02205 ATGGAAGAAGAAGATCATCATCATCAAGAACAAGAACAAGAACTGATGAGGCACGTGTGCAAGTTCTGCAACAAGAGCTTCCCTAGTGGAAGATCCTTAGGGGGTCACATGAGGTCTCACGTGACCAACAACACCCATGAAGCCGAAGAGAAAGAGAAGCTTTCATCATCTGAAGCTGGAACAATCACTAACAACAGCAGTGGCTATGGTTTGAGGGAGAATCCCAAGAAGACATGGAGGATCATTGCGGATTCATCAACTAATAGTGAAGACAACAACAACAACAACAACAACAACAATTCTTCTTCTTTTTCTTCTTTGTTGATGTGTGACAAGCTTTGCAAAGAGTGTGGAAAAGGGTTCAGTTCTTGGAAGGCCTTGTTTGGCCACATGAAACGCCATTCCCACTCTTCTTCTGCTTCTGCCTCTGATCAAGATTCTTGTTGGACAACGAAGAAGCTTCTTGTAATGGATTCACAATCTGATAATGAAGCCACTACTGCTGCTCCTCCAAGAAGGAGAACAAGGTCAAAGAGGAAAACAACAAGAAGGTATAACAATGCTTCTGCTTCGACGACTAGTTTTGCTGCGAAAACTTCTTGTTCTGTTTACTCTGAGGCTGAGGCTGAGGTTGAGATTGAGCAGGAGCAAGAAGAGGTTGCTATGAGCTTGATGATGCTTAGTAGAGATGTTGGTAATTGGTGGAGTGCTGGTGATGGTGGTGTTCATTCTCTTGCCGAGTCTTCTTCGGTTTTTAGGACTAGAATTCAGGACAAGAAGATGATGAAGATCAATGCTTGTTCTGAGGTTGGAAGAGTAGGAAGAAGCGCAGAACTTTTGGATTTGGATTTGGAGGATGATGGATTTGAACATGGCAAGAAGTACAGTTCAATCAAGGAGAAGATTTCGGATTATTCGAATTCGAATTCGGCTAATAAGAGGGGAAAGTTTGAGTGTACTACTTGCAAGAGGATCTTCCATTCTTATCAAGCACTTGGAGGGCATAGAGCAAGTCACAAGAAGATTAAGGGTTGCTTTGGTTCAAACAATGATAACAGCATTCAGATTGAGATTGAGATTGAGACTGAACTCTCTCCTAACAACAAAATTGAGAGTTTAGAGAATGAACAACTTGGTTTTGATGATTATGATGATGAAGATGATGATGATGAGGCTGAAGAAGAAGATAACAAGACAGCAAAGAAGGTAAACAAAGTTCATGAGTGTCCAATTTGCCTGAAAGTTTTTGCTTCTGGACAAGCATTGGGTGGACACAAGAGATCTCACACTGCCAAAATTGAGGAACAGGAAGAAGAACAAGTTCAAGAAATTAGGGTTAGGGATTTGCTTGATCTGAATGTTCCAGCAGCAGCAGCTACTACTACTGAAGAGGATGAAGCTAACAACAGTTTCAATGCTGATTCTAATAATAATAAGAGGCATTGGTGGGAAGAGGCACCACTGCTAGGACTTATCTCTCTTAACTAA 1488 0.4153 MEEEDHHHQEQEQELMRHVCKFCNKSFPSGRSLGGHMRSHVTNNTHEAEEKEKLSSSEAGTITNNSSGYGLRENPKKTWRIIADSSTNSEDNNNNNNNNNSSSFSSLLMCDKLCKECGKGFSSWKALFGHMKRHSHSSSASASDQDSCWTTKKLLVMDSQSDNEATTAAPPRRRTRSKRKTTRRYNNASASTTSFAAKTSCSVYSEAEAEVEIEQEQEEVAMSLMMLSRDVGNWWSAGDGGVHSLAESSSVFRTRIQDKKMMKINACSEVGRVGRSAELLDLDLEDDGFEHGKKYSSIKEKISDYSNSNSANKRGKFECTTCKRIFHSYQALGGHRASHKKIKGCFGSNNDNSIQIEIEIETELSPNNKIESLENEQLGFDDYDDEDDDDEAEEEDNKTAKKVNKVHECPICLKVFASGQALGGHKRSHTAKIEEQEEEQVQEIRVRDLLDLNVPAAAATTTEEDEANNSFNADSNNNKRHWWEEAPLLGLISLN 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02205 495 ProSiteProfiles Zinc finger C2H2 type domain profile. 18 45 IPR013087 -
Aip01g02205 495 MobiDBLite consensus disorder prediction 159 189 - -
Aip01g02205 495 MobiDBLite consensus disorder prediction 28 76 - -
Aip01g02205 495 ProSitePatterns Zinc finger C2H2 type domain signature. 114 136 IPR013087 -
Aip01g02205 495 SUPERFAMILY beta-beta-alpha zinc fingers 113 339 IPR036236 -
Aip01g02205 495 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 11 493 - -
Aip01g02205 495 MobiDBLite consensus disorder prediction 57 72 - -
Aip01g02205 495 Gene3D Classic Zinc Finger 4 68 - -
Aip01g02205 495 ProSitePatterns Zinc finger C2H2 type domain signature. 20 40 IPR013087 -
Aip01g02205 495 Pfam C2H2-type zinc finger 114 134 - -
Aip01g02205 495 Pfam C2H2-type zinc finger 317 341 - -
Aip01g02205 495 Pfam C2H2-type zinc finger 406 430 - -
Aip01g02205 495 Pfam C2H2-type zinc finger 17 40 - -
Aip01g02205 495 ProSiteProfiles Zinc finger C2H2 type domain profile. 112 139 IPR013087 -
Aip01g02205 495 SMART c2h2final6 317 339 IPR013087 -
Aip01g02205 495 SMART c2h2final6 407 429 IPR013087 -
Aip01g02205 495 SMART c2h2final6 112 134 IPR013087 -
Aip01g02205 495 SMART c2h2final6 18 40 IPR013087 -
Aip01g02205 495 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 11 493 - -
Aip01g02205 495 ProSiteProfiles Zinc finger C2H2 type domain profile. 407 434 IPR013087 -
Aip01g02205 495 ProSitePatterns Zinc finger C2H2 type domain signature. 319 339 IPR013087 -
Aip01g02205 495 SUPERFAMILY beta-beta-alpha zinc fingers 17 45 IPR036236 -
Aip01g02205 495 ProSitePatterns Zinc finger C2H2 type domain signature. 409 429 IPR013087 -
Aip01g02205 495 MobiDBLite consensus disorder prediction 374 401 - -
Aip01g02205 495 ProSiteProfiles Zinc finger C2H2 type domain profile. 317 344 IPR013087 -
Aip01g02205 495 SUPERFAMILY beta-beta-alpha zinc fingers 404 432 IPR036236 -
Aip01g02205 495 MobiDBLite consensus disorder prediction 42 56 - -
Aip01g02205 495 MobiDBLite consensus disorder prediction 377 394 - -
Aip01g02205 495 Gene3D Classic Zinc Finger 314 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02205 Aip-Chr1 116587651 116589464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02205 400 457 C2H2 Transcription Factor Family AT1G26610 52.459 6.84e-12 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip01g02205 zf-C2H2_6 5.7e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02205 - - aip:107619267 844.728