Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02178 ATGTATCACTCTGCAGATTCAAAGCCTCCAGCTATGGATTCACCAGTGACCCTTTTGATTAAGCACCTTCTCGAAGCTATACCTCATGACACCCTTTCTCGCCTCTTATCTCATTATGGTGCTTCCTCTCTTCGTCCTTGCTCTACTGGAAGGTTGAGGAATTGTGCTTTCGTAGATTTCAAAAATGAAATGTCGGCATCTCAAGCACAACGTCAACTACATGGGTTGAGGCTTCTTGGTAAAGTCTTGTCAGCAGAGAGAGCTAATAATCCAATGGAAAGTGGCGAAAAAGGCAGTGTAGCTCAGCTGGGAAAGGAGTCTAAAGCGTCTGTGGTTAAAGATACAACTGTAACCAAAGCTATTGATGAAGATACAAAATCAGGATGTTTCCCTGTTGCTGAGCCAATTGCTGAAAGACTTGGTGTTGACTATCCATTTCCACCTCACCTTGAGTACGCTTACCCTCCGCCGGATGGAAATATATTGACCAACATTGTTAATGCTCTGATTGCTGTTCCCCGATTTTACACTCAGGTTGTTCTACACTTAATGAACAAAATGAACATTCCAGCTCCATTTCGTATGGCATTGCCAACACCGCCATTACCTCCAGCCGTGCCAACACCACCACCTCCCCCTCCTCGGGTACCTTTGAAGCCTCAGTCTGCAGATCTGTCAAGTGGTGAATCAGAGATGGAATCTTCAGAAGAGGAGGTAGAGCCAACAACAGAAAAGCCTAAGAAGCGTGCCAGGCGTGAGACAATTATTGGCCCTGCCATTGATAAAGATGTAGCTCATGAGGATGTTGGAGTAAAACCAGCCACCTTAGTCCCAAAAGAAATCCCAGTAATCAAGAAGAACCCTGTTTTGCAGATCAATATTGCTCCCAAAGAAATTAAGGATGAGCGAAAAAATGATGACAGAAGCCAAGATTTACAGGAGCCAGAAAAAGAGAGTCCAGATCCACATAAATTCTTGACTCCAGAAGAATTAGAGAGTATTAACTATACCACTGGAAATCCGGCTCCTGTGTTGTATATTAAGAATTTGGCAAAAGATGTGGTTGGTGAAGATTTTTTTTTAATATTTGGGTGCTTGTTTGGAAGTATTGAGACTGCCAAGTCTTGCCTTCATGTAAAACTGATGCAGGAAGGAAGGATGAGAGGTCAAGCATTTTTAACATTCCCATCAATTGAGCTGGCTCATCAGGGACTGAATCTAGTGAATGGATATGTATTTAAAGGCAAGCCAATGATAATCCAGTTTGGTCGGAATCCTGGTGCCACTAAAGGAACTTGA 1299 0.4311 MYHSADSKPPAMDSPVTLLIKHLLEAIPHDTLSRLLSHYGASSLRPCSTGRLRNCAFVDFKNEMSASQAQRQLHGLRLLGKVLSAERANNPMESGEKGSVAQLGKESKASVVKDTTVTKAIDEDTKSGCFPVAEPIAERLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVVLHLMNKMNIPAPFRMALPTPPLPPAVPTPPPPPPRVPLKPQSADLSSGESEMESSEEEVEPTTEKPKKRARRETIIGPAIDKDVAHEDVGVKPATLVPKEIPVIKKNPVLQINIAPKEIKDERKNDDRSQDLQEPEKESPDPHKFLTPEELESINYTTGNPAPVLYIKNLAKDVVGEDFFLIFGCLFGSIETAKSCLHVKLMQEGRMRGQAFLTFPSIELAHQGLNLVNGYVFKGKPMIIQFGRNPGATKGT 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02178 432 CDD RRM2_RBM40_like 344 423 - -
Aip01g02178 432 CDD RRM1_RBM40_like 17 88 IPR034147 GO:0005515
Aip01g02178 432 MobiDBLite consensus disorder prediction 239 261 - -
Aip01g02178 432 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 83 IPR000504 GO:0003723
Aip01g02178 432 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 345 417 IPR000504 GO:0003723
Aip01g02178 432 SMART rrm1_1 17 86 IPR000504 GO:0003723
Aip01g02178 432 SMART rrm1_1 344 421 IPR000504 GO:0003723
Aip01g02178 432 PANTHER RNA-BINDING REGION-CONTAINING PROTEIN 3 10 430 - -
Aip01g02178 432 MobiDBLite consensus disorder prediction 295 329 - -
Aip01g02178 432 MobiDBLite consensus disorder prediction 296 328 - -
Aip01g02178 432 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 90 IPR000504 GO:0003723
Aip01g02178 432 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 343 425 IPR000504 GO:0003723
Aip01g02178 432 Gene3D - 338 431 IPR012677 -
Aip01g02178 432 SUPERFAMILY RNA-binding domain, RBD 16 426 IPR035979 GO:0003676
Aip01g02178 432 PANTHER UNCHARACTERIZED 10 430 IPR045164 -
Aip01g02178 432 MobiDBLite consensus disorder prediction 202 261 - -
Aip01g02178 432 Gene3D - 2 105 IPR012677 -
Aip01g02178 432 MobiDBLite consensus disorder prediction 202 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02178 Aip-Chr1 115483762 115489491 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02178 345 421 Eukaryotic Initiation Factors Gene Family AT3G16380 33.766 1.72e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02178 K13157 - gmx:100818499 577.4