Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02175 TGGTTAATACAATTGCATCCTATATAGGTCCATTGTTGTTTACATACTTTGTGAATTTCTTGGTGGATGATAATTCCAATTCAAGCATCCAATGCAGCCTCATTCTTGCATTCATATTCTTCCTCTCAAAGACATTGGAGTCACTGAGCCAAAGACAATGGTACTTTGGTGCTCAGAGAATTGGAATTCGAGTGCGCACGGCTCTTATGACTCTAATTTACAGCAAGTCCTTAATGATCAAGTGTGCAGGGCCAACCCATGGAAAAATCATAAACTTGGTGAATGTGGATGTTGAAAGAATTGGGGATTTCTGCTTGAACATTCATGGAGTTTGGTTGCTTCCAGTTCAGATTATTTTGGGCTTAGTGATATTGTACATAAACTTGGGATTCTTGCCTTCAATTTCTGCACTTGCTGTCATCATTTTGGTTATAGTGTGTAACACACCTTTGGCCAATATGCAAGAAAAATTACACTCCAAGATCAAGCTTATAGAGGAGGATACAAGAATCAAGATGACTTCAGAGATAATGAAGAACATAAGGATACTGAAATTGCGTTCATGGGGATCTACATTCTTACAGAAACTCCTCCAATTGAGAGACACTGAGAAGAGTTGGCTGCAGAAGTACCTCTACACTCGCTCAGCAGTAGCCACTCTTTTCTGGACTGCTCCAACTTTGGTTTCTGTTGTTACTTTCGGCATCTGCATACTGGTGAACACAGAACTGACTGCGGCTACTGTCCTCTCAGCCTTGGCAACTTTTCGGATTCTGCAGGAACCAATCTACAATCTTCCTGAGCTGATTTCCATGATAGCTCAAACGAAAGTCTCTCTTGATCGAATCCAAGAGTTGATCAATGAAGAGGATCAGAACCAGTTTATGAACAAGCACACTTCAAAAGATTCATCAATTGTTATTGAAATCAAGCCAAGTGAATATGCACGGGAAACAAGTGATGGAACCAACAAGAAACCAACAATTCAAATCACAGAAAACTTGAAGATAAAGAAAGGTCAGAAGGTAGCAGTTTGTGGTTCAGTGGGGTCTGGAAAATCAAGCTTACTTTGTTGTATGCTTGGTGAGATTCCATTGGTTTCCGAGACATTGATCAAAGTCTATGGAACAAGAAGTTATGTGCCACAGAGTCCCTGGATTCAATCAGGAACAATAAGAGAGAATATCCTGTTTGGAAAGGAAATGAACAAGGACTTCTATGAAAATGTTTTGGCTGGCTGTGCTTTGCATCACCATATCAACATGTGGGGTGATGGAGATTTGAATCTTGTGGAGGAGAGGGGCATAAACTTAAGTGGAGGCCAGAAACAACGGATTCAACTCGCAAGAGCTGTTTACAATGATTCAGATATTTACTTCCTTGATGATCCTTTCAGTGCAGTTGATGCTCATACCGGAACTCATTTATTTAAAAAATGCCTTATGCAACTTTTGTTTGAGAAGACAGTTGTTTATGCTACTAGTACTCATCAACTAGAATTTTTGGAAGCTGCAGATTTAATTCTGGTAATGAAAGATGGAAAAATAGTGGAGTCAGGAAGGTATAAAGAACTCATAGCATGTCCCAACTGTGAATTTGTTCGACAAATGGCTGCTCATGAAGAAACAATAAACCAAATAAATCCATGGCATGAAGAGAACTCTATTAGCTGCAGGCCCCTTCAAAAGAATCAAATTGAAGTTGCTGAAGAGAATCTTCAAGAAAGCATAAGCAATTGGAAGAGAAACAAAGAAGAAGAAGCAGAGACCGGTCGAGTGAAATGGAGTGTTTACTCAACCTTTGTCACATCTGCATATAGAGGATCACTTGTTCCGGTCATTCTTCTCTGCCAGATTCTGTTTCAAGTGATGCAAATGGGAAGCAATTATTGGATTTCTTGGGCTGCAGAACAAACTGGGAGGGTAACCAAAGGGATGCTTATGGGAACATTTGTTCTTCTTTCTGGTGGAAGCTCTATCTTTATACTTGGAAGGACTGTTTTGATGGCAGTGGTGGCTATTGAGACAGCTCAGCGTCTTTTTCATGGAATGATTACATCTGTTTTCAGAGCACCTGTTTCATTTTTTGATACCACACCATCAAGCAGAATCCTCAGTAGGGTCGCGTGGCAAGTCATCCTTGTGTTTCTTGTGGTGTTTGCTATCTCCATATGGTATCAGGCTTATTACATTACTACTGCCAGGGAATTAGCCAGGATGGTAGGGATCAGAAAGGCCCCAATCTTGCATCATTTCTCAGAATCTATTGCTGGGGCCACCACGATTCGTTGTTTCAATCAAGAACAAATATTCATGACCAAAATCAAGGATCTTGTTGATGAATACTCTAGAGTAGCCTTTTCATAA 2366 0.4024 VNTIASYIGPLLFTYFVNFLVDDNSNSSIQCSLILAFIFFLSKTLESLSQRQWYFGAQRIGIRVRTALMTLIYSKSLMIKCAGPTHGKIINLVNVDVERIGDFCLNIHGVWLLPVQIILGLVILYINLGFLPSISALAVIILVIVCNTPLANMQEKLHSKIKLIEEDTRIKMTSEIMKNIRILKLRSWGSTFLQKLLQLRDTEKSWLQKYLYTRSAVATLFWTAPTLVSVVTFGICILVNTELTAATVLSALATFRILQEPIYNLPELISMIAQTKVSLDRIQELINEEDQNQFMNKHTSKDSSIVIEIKPSEYARETSDGTNKKPTIQITENLKIKKGQKVAVCGSVGSGKSSLLCCMLGEIPLVSETLIKVYGTRSYVPQSPWIQSGTIRENILFGKEMNKDFYENVLAGCALHHHINMWGDGDLNLVEERGINLSGGQKQRIQLARAVYNDSDIYFLDDPFSAVDAHTGTHLFKKCLMQLLFEKTVVYATSTHQLEFLEAADLILVMKDGKIVESGRYKELIACPNCEFVRQMAAHEETINQINPWHEENSISCRPLQKNQIEVAEENLQESISNWKRNKEEEAETGRVKWSVYSTFVTSAYRGSLVPVILLCQILFQVMQMGSNYWISWAAEQTGRVTKGMLMGTFVLLSGGSSIFILGRTVLMAVVAIETAQRLFHGMITSVFRAPVSFFDTTPSSRILSRVAWQVILVFLVVFAISIWYQAYYITTARELARMVGIRKAPILHHFSESIAGATTIRCFNQEQIFMTKIKDLVDEYSRVAFS 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02175 787 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 309 537 IPR003439 GO:0005524
Aip01g02175 787 CDD ABCC_MRP_domain1 333 514 - -
Aip01g02175 787 SUPERFAMILY ABC transporter transmembrane region 2 289 IPR036640 GO:0005524|GO:0016021
Aip01g02175 787 CDD ABC_6TM_ABCC_D1 1 282 IPR044746 GO:0140359
Aip01g02175 787 Gene3D ABC transporter type 1, transmembrane domain 707 787 IPR036640 GO:0005524|GO:0016021
Aip01g02175 787 PANTHER OS01G0902100 PROTEIN 704 786 - -
Aip01g02175 787 PANTHER OS01G0902100 PROTEIN 1 707 - -
Aip01g02175 787 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 612 787 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip01g02175 787 SUPERFAMILY ABC transporter transmembrane region 612 785 IPR036640 GO:0005524|GO:0016021
Aip01g02175 787 ProSitePatterns ABC transporters family signature. 437 451 IPR017871 GO:0005524
Aip01g02175 787 Pfam ABC transporter transmembrane region 709 786 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip01g02175 787 Pfam ABC transporter transmembrane region 614 707 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip01g02175 787 Pfam ABC transporter transmembrane region 2 261 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip01g02175 787 SMART AAA_5 338 514 IPR003593 -
Aip01g02175 787 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 333 527 IPR027417 -
Aip01g02175 787 Gene3D ABC transporter type 1, transmembrane domain 550 706 IPR036640 GO:0005524|GO:0016021
Aip01g02175 787 Gene3D ABC transporter type 1, transmembrane domain 1 296 IPR036640 GO:0005524|GO:0016021
Aip01g02175 787 Pfam ABC transporter 333 464 IPR003439 GO:0005524
Aip01g02175 787 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 274 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip01g02175 787 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 707 - -
Aip01g02175 787 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 704 786 - -
Aip01g02175 787 Gene3D - 320 539 IPR027417 -
Aip01g02175 787 Coils Coil 562 589 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02175 Aip-Chr1 115424385 115427228 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02175 325 563 Calmodulin-binding Proteins AT2G36910 29.924 9.20e-21 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02175 - - adu:107481980 1442.17