Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02174 ATGGAATGGTTGTCAGTCCGGATCAATTTTCTCTTCAATCTAGTCTTCTACTTTGTTCTCATCATCTTGGTTACTCTGCCAAGATCTGCCATTGATCCCGGCTTGGCAGGTCTGGTAGCTACTTATGGTTTGAACTTGAATGTACTTCAGGCTTGGGTCATATGGAACCTTTGCAATGTTGAGAACAAGATGATATCTGTTGAGAGAATATTGCAATTCTCTAGCATACCAAGTGAAGCACCACTGATAATCCAAGATTGTAGGCCTGAACCAGAGTGGCCTATGGAAGGGAAAGTTGAGCTTCAGAATATTCATATTCAGTATGATCCGGCTGGTCCTACGGTTCTCAAAGGTGTCACTTGCACATTCCCGGGGCGAAAGAAGATCGGAGTAGTAGGGAGGACAGGGAGTGGAAAATCAACTCTGGTGCAAGCCCTTTTTCGAGTGGTGGAGCCTTTGGAAGGAAAGATACTAATAGATGGAGTACATATTTCCAAGATTGGTCTGCATGATTTAAGATCTAAGCTTGAAAACTTTGCTCTTCGGGTTCTCAAGAAGTGCCATCTTGCTGAAATTGTAAGGCAGGATCCAAGACTTCTTGATGCACCAGTGGCTGAGAATGGAGAAAATTGGAGCGTTGGACAAAGGCAACTCGTTTGTCTTGCTAGGCTGCTATTGAAGAAGAGAAGGATTTTGGTTCTAGATGAGGCAACAGCATCTATTGACACTGCAACTGACAATTTAATTCAAAAGACTATTAGAGAAGAAACTAGTGAATGCACAGCAATTACTGTAGCACATAGAATCCCTACAGTTTTTGATAATGACTTGGTTTTGGTCCTTGATGAAGGGACAATTGCAGAGTATGATGAACCAGATCATTTGCTGCAGAACAATACTTCATCTTTCTCAAAGTTGGTTTCAGAATTTTTGAGGAGATCATTAGTAGTTGCCAAAAAAGGACACAGAAACCAGACACTCAGAGGCGGATCTAAGGGGGCCTAA 1005 0.4229 MEWLSVRINFLFNLVFYFVLIILVTLPRSAIDPGLAGLVATYGLNLNVLQAWVIWNLCNVENKMISVERILQFSSIPSEAPLIIQDCRPEPEWPMEGKVELQNIHIQYDPAGPTVLKGVTCTFPGRKKIGVVGRTGSGKSTLVQALFRVVEPLEGKILIDGVHISKIGLHDLRSKLENFALRVLKKCHLAEIVRQDPRLLDAPVAENGENWSVGQRQLVCLARLLLKKRRILVLDEATASIDTATDNLIQKTIREETSECTAITVAHRIPTVFDNDLVLVLDEGTIAEYDEPDHLLQNNTSSFSKLVSEFLRRSLVVAKKGHRNQTLRGGSKGA 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02174 334 SMART AAA_5 125 283 IPR003593 -
Aip01g02174 334 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 314 - -
Aip01g02174 334 Pfam ABC transporter 198 239 IPR003439 GO:0005524
Aip01g02174 334 CDD ABCC_MRP_domain2 97 292 - -
Aip01g02174 334 SUPERFAMILY ABC transporter transmembrane region 2 79 IPR036640 GO:0005524|GO:0016021
Aip01g02174 334 Pfam ABC transporter 116 176 IPR003439 GO:0005524
Aip01g02174 334 Gene3D ABC transporter type 1, transmembrane domain 1 80 IPR036640 GO:0005524|GO:0016021
Aip01g02174 334 PANTHER OS01G0902100 PROTEIN 1 314 - -
Aip01g02174 334 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 300 IPR027417 -
Aip01g02174 334 Gene3D - 178 310 IPR027417 -
Aip01g02174 334 Gene3D - 82 177 IPR027417 -
Aip01g02174 334 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 99 308 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02174 Aip-Chr1 115422679 115424374 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02174 97 307 Calmodulin-binding Proteins AT2G36910 30.417 3.80e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02174 - - adu:107481980 543.502