Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02173 ATGTATCACTCTGCAGATTCAAAGCCTCCAGCTATGGATTCACCAGTGACCCTTTTGATTAAGCACCTTCCCGAAGCTATACCTCATGACACCCTTTCTCGGCTCTTATCTCATTATGGTGCTTCCTCTCTTCGTCCGTGCTCTACTGGAAGGTTGAGGAATTGTGCTTTTGTAGATTTCAAAAATGAAATGTTGGCATCTCAAGCACAACGTCAACTACATGGGTTGAGGCTTCTTGGTAAAGTCTTGTCAGCAGAGAGAGCTAATAATCCAATGGAAAGTGGCGAAAAAGGCAGTGTAGCTCAGCTGGGAAAGGAGTCTAAAGCGTCTGTGGTTAAAGATACAACTGTAACCAAAGCTATTGATGGAGATACAAAATCAGGATGTTTCCCTGTTGCCGAGCCAATTGCTGAAAGACTTGGTGTTGACTATCCATTTCCACCTCACCTTGAGTATGCTTACCCTCCGCCGGATGGAAATATATTGACCAACATTGTTAATGCTCTGATTGCTGTTCCCCGATTTTACACTCAGGTTCTACACTTAATGAACAAAATGAACATTCCAGCTCCATTTCGTATGGCATTGCCAACACCGCCATTACCTCCAGTCGTGCCAACACCACCACCTCCCCCTCCTCCGGTACCTTTGAAGCCTCAGTCTGCAGATCTGTCAAGTGGTGAATCAGAGATGGAATCTTCAGAAGAGGAGGTAGAGCCAACAACAGAAAAGCCTAATAAGCGTGCCAGGCATGAGACAATTATTGGCCCTGCCATTGATAAAGATGTAGCTCATGAGGATGTTGGAGTAAAACCAGCCACCTTAGTCCCAAAAGAAATCCCATTAATCAAGAAGAAGAACCCTGTTTTGCAGATCAATATTGCTCCCAAAGAAATTAAGGATGAGCGTAAAAATGATGACAGAAGCCAAGATTTACAGGAGCCAGAAAAAGATAGTCCAGATCTACATAAATTCTTGACTCCAGAAGAATTAGAGAGTGGAAAATTGCCTCCTGAAGAAATATTATCTCTTCCAATGTTTAAGAACTATACCACTGGAAATCCGGCTCCTGTGTTGTATATTAAGAATTTGGCAAAAGATGTGGTTGGTGAAGATTTTTTTTTAATATTCGGGTGCTTGTTTGGAAGTATTGAGACTGCCAAGTCTTGCCTTCATGTAAAACTGATGCAGGAAGGAAGGATGAGAGGTCAAGCATTTTTAACATTCCCATCAATTGAGCTGGCTCATCAGGGACTGAATCTAGTGAATGGATATGTATTTAAAGGCAAGCCAATGATAATCCAGTTTGGTCGGAATCCTGGTGCCACTAAAGGAACTTGA 1341 0.4258 MYHSADSKPPAMDSPVTLLIKHLPEAIPHDTLSRLLSHYGASSLRPCSTGRLRNCAFVDFKNEMLASQAQRQLHGLRLLGKVLSAERANNPMESGEKGSVAQLGKESKASVVKDTTVTKAIDGDTKSGCFPVAEPIAERLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRMALPTPPLPPVVPTPPPPPPPVPLKPQSADLSSGESEMESSEEEVEPTTEKPNKRARHETIIGPAIDKDVAHEDVGVKPATLVPKEIPLIKKKNPVLQINIAPKEIKDERKNDDRSQDLQEPEKDSPDLHKFLTPEELESGKLPPEEILSLPMFKNYTTGNPAPVLYIKNLAKDVVGEDFFLIFGCLFGSIETAKSCLHVKLMQEGRMRGQAFLTFPSIELAHQGLNLVNGYVFKGKPMIIQFGRNPGATKGT 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02173 446 PANTHER UNCHARACTERIZED 10 444 IPR045164 -
Aip01g02173 446 Gene3D - 2 105 IPR012677 -
Aip01g02173 446 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 357 439 IPR000504 GO:0003723
Aip01g02173 446 CDD RRM1_RBM40_like 17 88 IPR034147 GO:0005515
Aip01g02173 446 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 90 IPR000504 GO:0003723
Aip01g02173 446 SMART rrm1_1 17 86 IPR000504 GO:0003723
Aip01g02173 446 SMART rrm1_1 358 435 IPR000504 GO:0003723
Aip01g02173 446 CDD RRM2_RBM40_like 358 437 - -
Aip01g02173 446 SUPERFAMILY RNA-binding domain, RBD 16 440 IPR035979 GO:0003676
Aip01g02173 446 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 83 IPR000504 GO:0003723
Aip01g02173 446 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 359 431 IPR000504 GO:0003723
Aip01g02173 446 PANTHER RNA-BINDING REGION-CONTAINING PROTEIN 3 10 444 - -
Aip01g02173 446 MobiDBLite consensus disorder prediction 203 219 - -
Aip01g02173 446 MobiDBLite consensus disorder prediction 296 330 - -
Aip01g02173 446 MobiDBLite consensus disorder prediction 203 253 - -
Aip01g02173 446 MobiDBLite consensus disorder prediction 238 253 - -
Aip01g02173 446 Gene3D - 352 445 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02173 Aip-Chr1 115405407 115413517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02173 359 435 Eukaryotic Initiation Factors Gene Family AT3G16380 33.766 1.74e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02173 K13157 - gmx:100818499 621.313