Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02170 ATGGCTTCTTGCAACTACTTCTTCAACCCTCAACAAACAGATGAATATCCTTTCCCACTTCCCATTCAATTTTCCTTGTATGATTATGATTATTACTATTATTCCAGTGGAAACAGTAACGAATATCCACCACTGGAATGTTGGGCACACGAGTTTTCAATACAAGACATGGAGTGTTACCCTTCACTTCCTTTTTATGAAACTCTCTCCGTCGAACCAATTTCAACTATTAAAGACTATGACTTTTATGATATTAAGAAAGGGTTTTCTGTCTGGAACGAAGTGGATGCCGGCTTTGATTGTTCGGAAAAAGTAGTTTCGTCATCATCATCACTTTCCAACAACAACAATGAAGAAGACAAGAGAATCAGGAGGGTCATGAATAAACGAGTTTGTAGAGAAGTGAGAAGTAGCAACAGTACGAAAATGTTATCAAGAAAGATGATATCCGAGTATTTCTACATGCCAATAACTCAAGCAGCGAAGGAACTTGATGTGGGCTTAACTCTTCTGAAGAAGAGATGCAGAGAGTTAGGGATTCGAAGGTGGCCCCATCGAAAACTTATGAGCCTTCAAACCCTCATCAATAATGTTCAGgagctagggaaggacgaggggaCAGAGAGTGAAGAGAAGCTAAGGAATGCAATTGAGATATTAGAGAAGGAAAAGAAGCTTCTGGAAGAAATGCCTGATTTGCAACTTGAAGACAATACCAAAAGGCTTAGACAAGCATGTTTCAAGGCCAACTACAAGAAGAGGAAGCTAATAATGGGTAGTAGTTCTTCAAATTCATCCATGGAATCTTCTTCATCATATAACATTATTGGACATAATGCAACAAGAATAACTAGTTGTAAAGGAGGCACAATGGATAGTATTGGATTTATTAGCTTTGAGGATGAAGAAGATCAAGAACGTGACATCAAATCTGTGTTGTCTTTGCCTCCTTTGTCCCATAACAATTAA 969 0.3705 MASCNYFFNPQQTDEYPFPLPIQFSLYDYDYYYYSSGNSNEYPPLECWAHEFSIQDMECYPSLPFYETLSVEPISTIKDYDFYDIKKGFSVWNEVDAGFDCSEKVVSSSSSLSNNNNEEDKRIRRVMNKRVCREVRSSNSTKMLSRKMISEYFYMPITQAAKELDVGLTLLKKRCRELGIRRWPHRKLMSLQTLINNVQELGKDEGTESEEKLRNAIEILEKEKKLLEEMPDLQLEDNTKRLRQACFKANYKKRKLIMGSSSSNSSMESSSSYNIIGHNATRITSCKGGTMDSIGFISFEDEEDQERDIKSVLSLPPLSHNN 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02170 322 ProSiteProfiles RWP-RK domain profile. 127 211 IPR003035 -
Aip01g02170 322 PANTHER PROTEIN RKD4 48 270 IPR044607 GO:0003700
Aip01g02170 322 Pfam RWP-RK domain 144 191 IPR003035 -
Aip01g02170 322 PANTHER PROTEIN RKD1-RELATED 48 270 - -
Aip01g02170 322 Coils Coil 203 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02170 Aip-Chr1 115352583 115354129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02170 130 255 AtRKD Transcription Factor Family AT1G18790 69.531 7.29e-57 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Aip01g02170 RWP-RK 2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02170 - - adu:107470725 501.901