Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02166 ATGGAGAGGAAAGGAAGTGCAAAGTTATATGAATTGCTGAAGAGATGTGCTACTCCAGCTTCATCAAGATTTGCCAATAATAACAATAATAATGATGCACTAGAAGGAGAAAGAGAGCAACTGAATGGCAAATACAAAATCCTGAGGAGTGTTATCCCAAGCCCCACGAAGATGGATAGAGCCTCTGTGGTGGGTGATGCCATTGAATATAATAAGGGAGCTGCTCAGAACGGTCTTAACCAGAATTCGACACTGCAGCTATCACGTGGCTTTTCTGTGGGAAAATCTCCTGGTTCTAAGCCTGGTGTTGCTGTGGTTGTCGAAAGAGTTAGGATACACGGGCTGTCAAGGTTTAGAAACCTGAGTAAATTCGCGCACTCCATGAAAGTGAAGGTGTTGCCTGCAGATCCAAATATTCGCATTCCAAACATAGAGATCTGTTTTCATAGGAATGCATCTCTTGCTATAGGAATGTGCTCACAAGGCCAGTGGGAAAAAGTTACCAAGGGTTCTTGGGTTCGATCAATGTCTCCTTTTGACCACAAGCTCTTAGATATAAGGACTGCTAGCTCAACACTGGCATCCTTCTTAAGCAAATCGTTAGCATTTTATTATAGCAGCGCAATGGCAGTTGGGATCATTCTTGTGATACTTATGATTCTTTACCAGACTGAACATTGTGGATGGGGTGTAGAGGCAGCTGAAACCATCTACAAAGACGAATTCATAATTGAGTATATTGGAGAAGGGGTAGGATCAGAAAGTGAGCGAATGGTTTTAGGCGTGGCGTAG 792 0.4306 MERKGSAKLYELLKRCATPASSRFANNNNNNDALEGEREQLNGKYKILRSVIPSPTKMDRASVVGDAIEYNKGAAQNGLNQNSTLQLSRGFSVGKSPGSKPGVAVVVERVRIHGLSRFRNLSKFAHSMKVKVLPADPNIRIPNIEICFHRNASLAIGMCSQGQWEKVTKGSWVRSMSPFDHKLLDIRTASSTLASFLSKSLAFYYSSAMAVGIILVILMILYQTEHCGWGVEAAETIYKDEFIIEYIGEGVGSESERMVLGVA 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02166 263 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 25 74 IPR011598 GO:0046983
Aip01g02166 263 PANTHER TRANSMEMBRANE PROTEIN (DUF2215) 79 193 - -
Aip01g02166 263 PANTHER TRANSMEMBRANE PROTEIN (DUF2215) 192 224 - -
Aip01g02166 263 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 38 70 IPR036638 GO:0046983
Aip01g02166 263 Coils Coil 24 51 - -
Aip01g02166 263 SUPERFAMILY SET domain 219 252 IPR046341 -
Aip01g02166 263 Gene3D - 37 83 IPR036638 GO:0046983
Aip01g02166 263 PANTHER TRANSMEMBRANE PROTEIN (DUF2215) 79 193 - -
Aip01g02166 263 PANTHER TRANSMEMBRANE PROTEIN (DUF2215) 192 224 - -
Aip01g02166 263 Pfam NEMP family 193 225 IPR019358 -
Aip01g02166 263 Gene3D SET domain 218 259 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02166 Aip-Chr1 115290006 115294825 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02166 14 70 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 45.614 6.42e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02166 - - ahf:112748261 262.307