Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02159 ATGTCATTTTGGTGGTTGAATCCATTGATGAAAAAAGGTAAAGAGAAAACACTTGAGGATGAGGATATCCCAAAGCTGCGCGAGCCGGATCGAGCAGAAAGTTGCTATTCTGTGTTTATAGAACAACTTAACAAACAGAAACAAAAAGAACCAACACTGCAGCCATCAGTATTTTGGACTATAATGTCCTGCCACTGGAGAGAGATTTGGATTTCAGGATTCTTTGCATTTATTAAGGTAGTTACTCTGTCTTGTGGTCCCCTGCTTTTGAATGCATTTATATTGGTTGCTGAGGGTAATGAAAGTTTCAAATATGAAGGTTATGTGTTGGCCATTTCACTTTTCTTTGCAAAGATCATAGAATCCTTGTCTCAAAGGCAATGGTATTTTCGATGTAGACTCGTTGGTATGAAGGTTAGATCACTTCTCACTGCAGCCATCTATAAGAAACAATTGAAGCTATCCAATGCTGCTAGATTGGAGCATTCTGGTGGTGAGATAATGAATTATGTGACTGTTGATGCATATAGGATTGGAGAATTTCCATTTTGGTTTCATCAGATGTGGACAACAAGCTTCCAAATATGCATTGCTTTGGTGATTCTTGTCCGAGCCATTGGACTCGCGACAATAGCCTCAATGGTAGTAATAATTCTCACTGTACTTTGCAATGCTCCATTGGCAAAGCTACAGCAGAAGTTTCAAAGCAAACTCATGGTGGCACAAGATGAGAGATTGAAGGCTAATTCTGAGGCTCTTGTGAATATGAAAGTTCTGAAGCTATATGCATGGGAGAAACATTTTAAGAAGGCTATTGAAGGCTTAAGGAATGTGGAACTTGAAATGTTATCAGCAGTGCAATCAAGAAAGGCCTACAACATCTTTCTCTTTTGGTCTTCGCCTATTCTGGTGTCCGCGGCTTCCTTTGCTGCATGCTACTTCTTGGAGATTCCTTTGCATGCAAACAATGTTTTCACTTTTGTGGCAACACTGCGCCTTGTGCAAGAGCCAATCACATCCATCCCAGATGTTATTGGAGTGGTTATTCAATCGAAAGTTGCATTCGCTCGAATTGGGAAGTTTCTTGAGGCATCTGAATTGCAGAATGCAAATTGCAGGAAGAGTTGTGTTGATGATAACCTCAGAGGCTCAATTTCAATCAAGTCTGCTGATTTTTCATGGGAAGATAATGTGTCAAAACCAACACTTAGAAACATAAATTTGGAGGTTAGGCATGGACAAAAGGTAGCAATTTGTGGAGAAGTTGGATCAGGAAAATCAACTCTCTTAGCAACAATTCTTGGAGAAGTTCCAAATACAAAGGGAACTATTGAAGTTTATGGGAGTTTTGCATATGTTTCTCAAACAGCATGGATACAGTCAGGTACAATAAGGGAAAATATTTTGTTTGGAGCAGATTTGGATCCACAAAGATATGAAGAGACGCTTTATAGATCTTCACTGATAAAGGATCTTGAGTTGTTTCCCTATGGAGATCTTACCGAAATAGGCGAGAGGGGAGTTAACCTGAGTGGAGGTCAGAAGCAGCGAATTCAGCTCGCTCGTGCGCTTTATCAGAATGCTGATATATATCTCTTGGATGATCCATTCAGTGCTGTTGATGCTCACACAGCCACAAATTTGTTTAAGGAATATATCATGGAAGGACTTGCAGGGAAGACTGTGTTACTTGTGACTCATCAAGTTGACTTCCTACCAGCTTTTGATTCTGTTATGTTGATGTTAGATGGGGAAATTCTACAAGCTGCTCCTTATCATCATCTATTGGAATCAAGCCGAGAATTCCAAGAACTCGTCGAGGCTCACAAGAAGACTGCTGGTTCTGACCATCAAGTTGACACTCCTTCTGCCAAGAGAGATTCAACTTCTGGCAGAGAGATTAAGCAAGATTTCTTGGAGAAGAAGTTACAAGCTTCAAACGAAAATAAATTGATTAAGCAAGAAGAAAGAGAGATAGGAGACACAGGCTTGAAGCCTTACATTCAGTATCTGAATCAGATGAAGGGATACATATACTTTGCTGCCACTACTCTTTGTCACATTTTATTTGTAGCTGGCCAAATAATTCAAAACTCATGGATGGCTGCTAATGTGGACAACCCTCATATCAAAACTCTGAAATTGATCTTAGTCTACTTGTTGATCGGAGTTGTTTCGATCGTTTTCATGTTAATCAGAACTTTTCTTATAGCTGCTTTAGGTCTTCTATCATCAAAACATCTATTTTCACAGTTGATGAACTCCCTTTTCCGCGCACCGATGTCTTTTTATGACTCCACACCTTTGGGAAGGATACTTAGCAGGGTATCTGCAGATATGAGCATTGTGGATCTTGATATACCATTTTACCTTGCATATACTGTGGGGGGTACTACAAATTTTTATTCTAATCTTGCAGTTTTATCATTTGTGAGTTGGCAAGTCTTGTTTGTTGCCATACCACTGGTTTTTGCTGCGATTCAATTGCAGAAATACTACTTTGCTACTGCAAAAGCATTGATGAGGTTGAATGGCACAACAAAATCATTTGTAGCCAATCATGTAGCTGAAACTAATGCTGGAGCTGTGACAATAAGAGCCTTTAAGGAGGAAGATCGCTTTTTCAAGAAGAATCTTGATCTGATTGATGTCAATGCTAGTCCATTCTTCCATAGTTTCACTTCAAATGAATGGTTGATCCAACGGTTAGAAACAATCAGTGCTGTTGTTCTATCTGCTGCAGCACTTTGCATGGTTGTGCTTCCACCCGAGACTTTCCCTGCCGGATTTATTGGCATGGCACTCTCTTATGGCCTTTCACTGAACAATTCCCTAGTATTTTCAATTCAATTTCAATGCACTCTAGCAAATTATATAGTATCTGTAGAGAGGATAAATCAATATATGTATATACCAAGTGAGGCCCCAGAAGTTATAGAAGGAAATCGCCCTCCGGTTAATTGGCCAGTTGCAGGGtgttctggcccagcccaataa 2997 0.3951 MSFWWLNPLMKKGKEKTLEDEDIPKLREPDRAESCYSVFIEQLNKQKQKEPTLQPSVFWTIMSCHWREIWISGFFAFIKVVTLSCGPLLLNAFILVAEGNESFKYEGYVLAISLFFAKIIESLSQRQWYFRCRLVGMKVRSLLTAAIYKKQLKLSNAARLEHSGGEIMNYVTVDAYRIGEFPFWFHQMWTTSFQICIALVILVRAIGLATIASMVVIILTVLCNAPLAKLQQKFQSKLMVAQDERLKANSEALVNMKVLKLYAWEKHFKKAIEGLRNVELEMLSAVQSRKAYNIFLFWSSPILVSAASFAACYFLEIPLHANNVFTFVATLRLVQEPITSIPDVIGVVIQSKVAFARIGKFLEASELQNANCRKSCVDDNLRGSISIKSADFSWEDNVSKPTLRNINLEVRHGQKVAICGEVGSGKSTLLATILGEVPNTKGTIEVYGSFAYVSQTAWIQSGTIRENILFGADLDPQRYEETLYRSSLIKDLELFPYGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDAHTATNLFKEYIMEGLAGKTVLLVTHQVDFLPAFDSVMLMLDGEILQAAPYHHLLESSREFQELVEAHKKTAGSDHQVDTPSAKRDSTSGREIKQDFLEKKLQASNENKLIKQEEREIGDTGLKPYIQYLNQMKGYIYFAATTLCHILFVAGQIIQNSWMAANVDNPHIKTLKLILVYLLIGVVSIVFMLIRTFLIAALGLLSSKHLFSQLMNSLFRAPMSFYDSTPLGRILSRVSADMSIVDLDIPFYLAYTVGGTTNFYSNLAVLSFVSWQVLFVAIPLVFAAIQLQKYYFATAKALMRLNGTTKSFVANHVAETNAGAVTIRAFKEEDRFFKKNLDLIDVNASPFFHSFTSNEWLIQRLETISAVVLSAAALCMVVLPPETFPAGFIGMALSYGLSLNNSLVFSIQFQCTLANYIVSVERINQYMYIPSEAPEVIEGNRPPVNWPVAGCSGPAQ 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02159 998 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 2 992 - -
Aip01g02159 998 CDD ABCC_MRP_domain1 385 585 - -
Aip01g02159 998 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 380 608 IPR027417 -
Aip01g02159 998 Pfam ABC transporter 403 537 IPR003439 GO:0005524
Aip01g02159 998 MobiDBLite consensus disorder prediction 611 631 - -
Aip01g02159 998 Gene3D ABC transporter type 1, transmembrane domain 40 366 IPR036640 GO:0005524|GO:0016021
Aip01g02159 998 Gene3D ABC transporter type 1, transmembrane domain 641 975 IPR036640 GO:0005524|GO:0016021
Aip01g02159 998 SUPERFAMILY ABC transporter transmembrane region 58 358 IPR036640 GO:0005524|GO:0016021
Aip01g02159 998 Gene3D - 380 614 IPR027417 -
Aip01g02159 998 SUPERFAMILY ABC transporter transmembrane region 677 974 IPR036640 GO:0005524|GO:0016021
Aip01g02159 998 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 70 350 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip01g02159 998 CDD ABC_6TM_ABCC_D2 680 969 IPR044726 GO:0140359
Aip01g02159 998 CDD ABC_6TM_ABCC_D1 71 358 IPR044746 GO:0140359
Aip01g02159 998 ProSitePatterns ABC transporters family signature. 510 524 IPR017871 GO:0005524
Aip01g02159 998 SMART AAA_5 412 585 IPR003593 -
Aip01g02159 998 Pfam ABC transporter transmembrane region 70 331 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip01g02159 998 Pfam ABC transporter transmembrane region 678 917 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip01g02159 998 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 690 957 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip01g02159 998 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 387 608 IPR003439 GO:0005524
Aip01g02159 998 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 2 992 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02159 Aip-Chr1 115020939 115024570 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02159 379 630 Calmodulin-binding Proteins AT2G36910 30.037 4.12e-25 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02159 K05666 - gmx:100787314 1570.06