Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02156 ATGAACTGCTGCTGCAAAGCTCTTTACTTCCAAAATGAAGCAACTTTAGCTCCTCATGGGCTGCGTGGTGGTCAAGCAAGGGGTGTCCGTGACTCCTCCAGCTTCAGGTTGGTCGGCAATTTGCAAAAGTACGTTGAAGGTGAGCAGGCGGCCGCCGGTTGGCCCGCTTGGCTTAGCTCCGTCGCCGCTGAGGCCATTCAGGGTTGGGTTCCCCTCCGTGCTGATGCATTTGAGAAGCTTGAGAAGATTGGGCAGGGTACATATAGTAGTGTTTTCAGAGCAAAGGAGCTTGAGACTGGGAAGATAGTGGCTCTGAAGAAGGTCAGGTTTGACAATTTCGAGCCAGAGAGCGTCCGGTTTATGGCGCGGGAGATAATGATTCTAAGAAGGCTTGATCATCCCAACATCATCAAATTGGAGGGCTTGATTACTTCCAGGTTGTCTTGTAGCATCTACCTTGTGTTTGAGTACATGCAACATGACATCACAGGGCTATTGTCTAGACCAGAAATCAAGTTTAATGAATCACAGATTAAATGCTACATGAAACAGTTGTTATCTGGTCTTGAGCATTGTCACTCGAAGGGTGTGATGCACCGAGACATCAAGGGATCGAATCTTTTGGTGAATGATGAAGGCATATTGAAGGTGGCAGATTTTGGATTGGCAAACTGGTGCAATTCAGGAAACAACAAGCAGCCCCTCACAAGTCGTGTTGTCACCTTGTGGTACCGTCCGCCAGAACTCTTGCTCGGCTCGACAGATTATAGTCCATCTGTGGATCTCTGGAGTGTTGGCTGTGTATTTGCAGAGCTACTTATTGGAAAGCCTATACTTCAGGGAAGAACTGAGGTTGAACAATTGCATAAAATCTTCAAGCTCTGCGGCTCTCCACCTGATGATTACTGGAAAAAGACCAAACTTCCTCATGCAACTTTGTTCAAGCCACAACAACCATACGATAGTAGCCTCTGGGAGACATTTAAAGATTTGCCTGCGACCAGCATAAATGTGCTACAAACGCTTCTTTCTGTCGAACCGAGCAAACGTGGGACTGCCACATCTGCTCTCTCATCAGAGTACTTCAAAACAAAACCATATGCATGTGATCCATCAAGCATGCCAATATACCCACCTAGCAAGGAGATTGACGCAAAGCACCAGGAGGAGTCAAAAAGGAAAAAGATTAGCGGCCGAGCTTGTAGACCAGAATCACGAAAACCATCAAGAAAGCCACTAGCACTCAGTAAATTAGCCCCAGCTGAGGATTTGACAAGTCAAATTCAAACTTCCCAAAGACAAAAAGTTGATGATAGCTCTTGCCAAGTCCTTAAAGAAGAGAACATTGACATAGATGAGGAGGCACCAAAGCTATCTAGTGATAAACCACTAGAACAAGATGGTTCCCATATGAAGGATGAAACAAAAGTAGATATTCCCTTTCCAGGACCATTGCAAGTTTCAAAATCAAGTGGCTTTGCATGGGCGAAAAGGCGTAAAGATGACACCTCAATTAGAGCACATTCTCGATCAATTTCAAGAGGGCACTTGTATAATTCCTTAGAAACTTCGACAGTAACTTCAAGGAATAATTCTGAATCCAGAAACTATGAAAACAAGGAATTCTGTGGAGGACGCTCCAACTCTAGGGGCCGTGATCTACTTGAAATTTCTAAGCTTGTAATGCAGAACCAGTGGAATAAGTTTGATCGTCCCGACTCATTTGATACTTCTGATGAGTACCATTCACAAGAACTATCTATGACACTTTATCACAGAGAAGACTCATTATCCAAGAGAAGTAACCTGAGTTCACAGGACCAAGGAGACACAGTTGATTTTTCAGGACCCTTAATATCTCAAATGCACACCGTCGATGAGATCTTAGAAAGACATGAGCGACACATACGGCGTACTGTCCGGCGATCGTGGTTTCAGAAAGATAAGAAGAATGGGAAGTAA 1962 0.446 MNCCCKALYFQNEATLAPHGLRGGQARGVRDSSSFRLVGNLQKYVEGEQAAAGWPAWLSSVAAEAIQGWVPLRADAFEKLEKIGQGTYSSVFRAKELETGKIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMQHDITGLLSRPEIKFNESQIKCYMKQLLSGLEHCHSKGVMHRDIKGSNLLVNDEGILKVADFGLANWCNSGNNKQPLTSRVVTLWYRPPELLLGSTDYSPSVDLWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPDDYWKKTKLPHATLFKPQQPYDSSLWETFKDLPATSINVLQTLLSVEPSKRGTATSALSSEYFKTKPYACDPSSMPIYPPSKEIDAKHQEESKRKKISGRACRPESRKPSRKPLALSKLAPAEDLTSQIQTSQRQKVDDSSCQVLKEENIDIDEEAPKLSSDKPLEQDGSHMKDETKVDIPFPGPLQVSKSSGFAWAKRRKDDTSIRAHSRSISRGHLYNSLETSTVTSRNNSESRNYENKEFCGGRSNSRGRDLLEISKLVMQNQWNKFDRPDSFDTSDEYHSQELSMTLYHREDSLSKRSNLSSQDQGDTVDFSGPLISQMHTVDEILERHERHIRRTVRRSWFQKDKKNGK 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02156 653 CDD STKc_CDK9_like 77 362 - -
Aip01g02156 653 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 33 646 - -
Aip01g02156 653 MobiDBLite consensus disorder prediction 382 411 - -
Aip01g02156 653 Pfam Protein kinase domain 77 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g02156 653 PANTHER CELL DIVISION PROTEIN KINASE 33 646 - -
Aip01g02156 653 MobiDBLite consensus disorder prediction 422 438 - -
Aip01g02156 653 Gene3D Phosphorylase Kinase; domain 1 64 159 - -
Aip01g02156 653 Gene3D Transferase(Phosphotransferase) domain 1 160 401 - -
Aip01g02156 653 ProSitePatterns Protein kinases ATP-binding region signature. 83 106 IPR017441 GO:0005524
Aip01g02156 653 MobiDBLite consensus disorder prediction 597 617 - -
Aip01g02156 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Aip01g02156 653 ProSiteProfiles Protein kinase domain profile. 77 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g02156 653 MobiDBLite consensus disorder prediction 523 548 - -
Aip01g02156 653 MobiDBLite consensus disorder prediction 601 617 - -
Aip01g02156 653 SMART serkin_6 77 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g02156 653 MobiDBLite consensus disorder prediction 373 483 - -
Aip01g02156 653 SUPERFAMILY Protein kinase-like (PK-like) 71 369 IPR011009 -
Aip01g02156 653 MobiDBLite consensus disorder prediction 439 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02156 Aip-Chr1 114939325 114943324 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02156 69 422 Core Cell Cycle Gene Families AT5G10270 48.378 8.26e-110 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Aip01g02156 Pkinase 5.1e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02156 - - aip:107633955 1300.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02156 01 114939325 114943324 Aip10g03031 10 127130084 127135637 ECH
Aip01g02156 01 114939325 114943324 Aip01g02156 01 114939325 114943324 ECH