Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02136 ATGTCTCCCCCATCCGTCGATCAAGGTAACGCCGATCCAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGTAGAGGAAGAAGAGGAAGAAGTAGAAGAAGAAGAAGAAGAGGAAGAAGAAGAAGATGTAGAGGAAGAGGAAGAGGAGGAAGAAGAGGTAGAGGTAGAGGAAGAGGTAGAAGAAGAGGTAGAAGAAGGAGAAGAAGAAGAGGAGGAGGTAGAGGAAGAAGAAGAGGAGCCAGAGGAGGTAGGGGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAACCGACGGTGATGATAAAGGCTACGCCTCAAATTCTGTATCCGATGCCGACAACGATGGCATAGATTCATGCCAACAAATGGAATCTGAAGTACAAGAGAGGAACTTGAGGCCAGCTTCTACTATGGCGGAAAACCCTATAGTAATGTCTTCTCCTAGTATGCCATCCAATGAAGATGATCATGCCATTCTCAAAGCATCTAGTCCTTCATCTGAGGAACTAAGTTTTAAAAAGGAAGAGGTTCACACAACACGCGAAATTTCAAGTCATCCCAAATCAGTAAATGATTTTGCTTCCGCTGAAGGTGGCAAAAGTCAAGTTTTAGACTCCAGCCAACAGATGAAATCTGAGGGGCAAGGGGGGGACTTGAGGCCAGCTTCCACCATGGCGGAAAACCCTGTAGTAAAGCCTTCTCCTAGTCTGTGTTCCAAAGAAGAGAATTGTGTCATTCTCAAAGCATGTGTTGTTTCTGCTCCTTCATCTGACACGCTAGCTTTGAAAAAGGAACAAGTTTTCCCAACTCCAAAAATTTCAAATTCTAGTCATCCCAAATCAGTTAAAAACTTGGCCCCTGCAGATGATGGCAAAAGTCAAGTTTTAGATGTTGATGGTGCAAATACTGGAATTGTTCAACTAACATACACTGTTGGAGGGTGCAATGAACCAAGTAACGATAGCAAAGCTGATTTAGGTGGTGTTAAGGATATGGATTCTGGGGCCACCAAGTTGTCTAGTAACATTGGAAAAGACATCGCTATTGGCCTTCCTCAAACGGATGCCTTTGTTGGGAGTGCCAATGGCAGTCAGAATTCCTTGAAAAGAATTGTACCATTGGAAGTAGAATCAAAGGATGATGTAAAACAAATCAAATCAAGGACTATAGTTCCGTCTTCGAATACTGAGATGAAGGATGGAAACAAACGCCAGGGAATTATATGTGCCTTTTTTGCTCAAGGGTGGTGCATCAGAGGTGATTCCTGTAGCTTTCTTCATATAAAAGATTCTGCAAAGGATACTGGCCAGGAGACTCAGGGGGACTTGGATAAAGCAAAGCAGAAGAGAGAACTGGAATTAGAAGAAGGTACCAGGGACAATATCAAAAGAACCAGGACGAATGAGCAAGAAGAAAGCTCAGACTGGCATCCTTGTCAAGAAAAAAATAAGTACCAGTTGAGGGACAACTTGTTTCCAGAGAGTAGATTTACAAGCAAATATTTCAACACAAGTCTCTCATCCTATTCAAATCATGCAGAGGGATTGAGTATAGCTCAAAACCATCATATGTACAATGAATATACTTCTGCAGTTTTGAGTCGTTCACCTAAGTTGAGCTTTGTTACTCAGAAACTTTTGAATAGTGACAAAGAATATAATGCCTCTAGATCTGCTTTCTCTGGCTCAGAGCGGGAGGAGTTGCCAGTGGTTGGTTCATCTAGGATTCCAATACACTCTGCTGCATATATATCAAAAATATGTTCTTATGATTGGGAACCTTCTGTACCGTTTCGACCATCATTTTTCATTACGTCAATGAATGTATCATCTCTGGGAGACCTGTATGACCCTCTTCGAGATAGCATTGAGATACCAAATATAGGAGATGGGTCTTTGAAAGCTTCCCTCTTAATTCATGGATCATCCATCCAGGCTTCATCACAGGTGCTGAAATATGGCGATTCAGCTGTAGTTGGGAAACATATTTCTGATTTTAATGATGAGAAAAGTTCCGTATCTTCTCATAATAGATTTGGTGAGAATCAACCAAACAAAAATTTGGTTCCTCATGAAAAAGATTGTCATGCAACTGAAATGGAAATAACATCAGGGACTTGTATGAACTACCCCAATGGTAAAATCGGCATGGGGAAAGATGTTACAAAATCAGACAGAGAATGGACTGAACATGATGCCAAACATCATGGTGAAGGATCAGCGCACAAGAAGAGAGTAGATAGGGATAAGAAAATTAATGATACAGATGCCGATTTGCAGACTGACTGCAGTGTGCAGAAGGATTCCAAAGCAATGAGACACTTTCGTGCAGCTCTTGTTGACTTGGTGAAAGAATTGTTAAAACCATCTTGGCACGAGGGCCGTCTTAGTAAGGATGCACATATCTTGATAGTTAAAAGATCAGTTGACAAGATACTCAGCACCTTAGAGCCTCAGCAAATTCCAACCTCTATAGATGCTACTAAGCAATATGTTTCTCTGTATCGAGGAAAAATTGCAAAGATGGTCAATGGATATATCAACAAATTTGGCAAGTCTTGA 2598 0.4161 MSPPSVDQGNADPEEEEEEEEEEEVEEEEEEVEEEEEEEEEEDVEEEEEEEEEVEVEEEVEEEVEEGEEEEEEVEEEEEEPEEVGEEEEEEEEEEEEEEEEEEEEEEETDGDDKGYASNSVSDADNDGIDSCQQMESEVQERNLRPASTMAENPIVMSSPSMPSNEDDHAILKASSPSSEELSFKKEEVHTTREISSHPKSVNDFASAEGGKSQVLDSSQQMKSEGQGGDLRPASTMAENPVVKPSPSLCSKEENCVILKACVVSAPSSDTLALKKEQVFPTPKISNSSHPKSVKNLAPADDGKSQVLDVDGANTGIVQLTYTVGGCNEPSNDSKADLGGVKDMDSGATKLSSNIGKDIAIGLPQTDAFVGSANGSQNSLKRIVPLEVESKDDVKQIKSRTIVPSSNTEMKDGNKRQGIICAFFAQGWCIRGDSCSFLHIKDSAKDTGQETQGDLDKAKQKRELELEEGTRDNIKRTRTNEQEESSDWHPCQEKNKYQLRDNLFPESRFTSKYFNTSLSSYSNHAEGLSIAQNHHMYNEYTSAVLSRSPKLSFVTQKLLNSDKEYNASRSAFSGSEREELPVVGSSRIPIHSAAYISKICSYDWEPSVPFRPSFFITSMNVSSLGDLYDPLRDSIEIPNIGDGSLKASLLIHGSSIQASSQVLKYGDSAVVGKHISDFNDEKSSVSSHNRFGENQPNKNLVPHEKDCHATEMEITSGTCMNYPNGKIGMGKDVTKSDREWTEHDAKHHGEGSAHKKRVDRDKKINDTDADLQTDCSVQKDSKAMRHFRAALVDLVKELLKPSWHEGRLSKDAHILIVKRSVDKILSTLEPQQIPTSIDATKQYVSLYRGKIAKMVNGYINKFGKS 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02136 865 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 185 865 - -
Aip01g02136 865 MobiDBLite consensus disorder prediction 115 165 - -
Aip01g02136 865 Gene3D - 405 496 - -
Aip01g02136 865 SUPERFAMILY CCCH zinc finger 415 439 IPR036855 GO:0046872
Aip01g02136 865 MobiDBLite consensus disorder prediction 736 765 - -
Aip01g02136 865 Coils Coil 11 112 - -
Aip01g02136 865 MobiDBLite consensus disorder prediction 1 247 - -
Aip01g02136 865 MobiDBLite consensus disorder prediction 180 197 - -
Aip01g02136 865 MobiDBLite consensus disorder prediction 467 492 - -
Aip01g02136 865 MobiDBLite consensus disorder prediction 212 226 - -
Aip01g02136 865 MobiDBLite consensus disorder prediction 10 112 - -
Aip01g02136 865 MobiDBLite consensus disorder prediction 681 702 - -
Aip01g02136 865 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 185 865 - -
Aip01g02136 865 ProSiteProfiles Zinc finger C3H1-type profile. 415 442 IPR000571 GO:0046872
Aip01g02136 865 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 420 439 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02136 Aip-Chr1 114582004 114586356 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aip01g02136 zf-CCCH 2.3e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02136 - - adu:107468208 1460.66