Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02118 ATGGAAAAAGTGGCATCATTGGTGTTGAAGGAAGAGGAGCAGATGGATTTACCTCCGGGGTTTCGGTTTCACCCAACTGATGAAGAGCTCATAACCCATTACCTATACAAGAAAGTTATTGACACCAACTTCGCCGCAAGAGCCATTGGCGAAGTCGACCTTAACCGCTGCGAGCCTTGGGATTTGCCATGGAAAGCGAAAATGGGAGAGAAAGAGTGGTACTTCTTCTGCGTGAGGGATAGGAAGTATCCGACCGGGTTGAGGACAAACCGGGCCACGGAGTCTGGGTACTGGAAGGCAACCGGGAAAGACAAGGAGATTTTTCGAGGCAAATCTCTCGTCGGAATGAAGAAAACGCTTGTCTTCTACAAAGGAAGAGCACCTAAAGGAGAGAAAACAAACTGGGTCATGCACGAGTTCAGGCTGGAGGGAAAATTCTCCATCCATAACCTCCCAAAAACCGCAAAGAACGAGTGGGTGATTTGCAGGGTGTTTCGGAAGAGTTCAGCTGGCAAGAAGGTTCACATCTCTGGAATCATGAGGCTCGACACTTTCCGAACTGAATTGGATTCTTCCGGTCTACCTCCCTTGACGGAGACCTCGCCCTCTTTCGACACCATCCATGACGAATCGCCTTACGTGCCCTGCTTCTCCAATCCAATTGATGTTCCAAGAAACCAAGCCGCAGGCGGAAGCGGAGGAGGAGGAGGAGTCTTTGGTGGTTCCTTCCCCAACAACTCCTCCTCTTCTGTTTCCGCCTACGCGGTTTCTTCCAACATTCTCCCAAGGATGCCGATTTGCGGCGGTTCCTTGTACTCTACTCAACATCAAGATCAGAGTATCCTGAGGGCGTTGTATGAATCGAACGAAAGGGAAATGATCAGTGTGTCACAGGAAACAGGCCTCACTACTGAGATGAACGTGGAAACCAATTCCGTGGTGTCCAATTTTGATATAGGGAGGGCTCACTTTGAGAGCTTGTGGAATTACTGA 993 0.4955 MEKVASLVLKEEEQMDLPPGFRFHPTDEELITHYLYKKVIDTNFAARAIGEVDLNRCEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATESGYWKATGKDKEIFRGKSLVGMKKTLVFYKGRAPKGEKTNWVMHEFRLEGKFSIHNLPKTAKNEWVICRVFRKSSAGKKVHISGIMRLDTFRTELDSSGLPPLTETSPSFDTIHDESPYVPCFSNPIDVPRNQAAGGSGGGGGVFGGSFPNNSSSSVSAYAVSSNILPRMPICGGSLYSTQHQDQSILRALYESNEREMISVSQETGLTTEMNVETNSVVSNFDIGRAHFESLWNY 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02118 330 Gene3D NAC domain 26 171 IPR036093 GO:0003677|GO:0006355
Aip01g02118 330 PANTHER NAC DOMAIN-CONTAINING PROTEIN 100 7 303 - -
Aip01g02118 330 Pfam No apical meristem (NAM) protein 18 142 IPR003441 GO:0003677|GO:0006355
Aip01g02118 330 ProSiteProfiles NAC domain profile. 17 167 IPR003441 GO:0003677|GO:0006355
Aip01g02118 330 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 303 - -
Aip01g02118 330 SUPERFAMILY NAC domain 13 167 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02118 Aip-Chr1 114172542 114174001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02118 15 325 NAC Transcription Factor Family AT5G07680 59.177 4.11e-127 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aip01g02118 NAM 1.4e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02118 - - gmx:100170719 459.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02118 01 114172542 114174001 Aip10g03006 10 126563868 126566360 ECH
Aip01g02118 01 114172542 114174001 Aip01g02118 01 114172542 114174001 ECH