Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02117 ATGGGATTTTTGGGAGTTGTGTTGATGGGGTTTATTTCATTAGTAGGAATAGGTGTTCATGGGAATGATGCTAATGGTAATAGTTGGTTGGATGCCCATGCAACCTTCTATGGAGGGGGTGATGCCTCTGCCACAATGGGTGGAGCTTGTGGATATGGAAACCTGATTAGGCAAGGATATGGGACTGAAACAGCCGCTTTGAGCAGTGCATTGTTCAACAATGGCATGAGCTGTGGGGCATGTTTTGAGGTGAAGTGTGTGAGTGATCAAAGCTGGTGCCTCCCTGGCTCAGTTGTGGTCACTGCCACCAATTTCTGTCCTCCAAACAATGCCCTCCCAAGCGATAACGGCGGTTGGTGCAACCCTCCCCTTCAACACTTTGATCTCTCTCAACCTGTCTTCCAACAAATTGCTCAATACAGAGCTGGCATAGTCTCTGTAGCTTATAGAAGGGTCCCATGCCAAAGGAAAGGAGGCATCAGATTCACCATCAATGGCCATTCTTACTTCAACCTAGTCCTAATCACCAATGTTGGGGGTGCGGGCGACGTTACCGCGGTTTCCATCAAAGGCTCAAGAACCGGTTGGCAACCAATGTCCAGGAACTGGGGTCAGAACTGGCAGAGCAATTCTTACCTCAATGGACAAAGCCTCTCCTTTAAGGTCACCGCCAGCGACGGCCGCACCGTTGTCTCCAGTGATGTTGCCCCTCCTGGTTGGTCCTTTGGCCAGACCTTCACAGGCCAACAATTCCCTTAG 759 0.502 MGFLGVVLMGFISLVGIGVHGNDANGNSWLDAHATFYGGGDASATMGGACGYGNLIRQGYGTETAALSSALFNNGMSCGACFEVKCVSDQSWCLPGSVVVTATNFCPPNNALPSDNGGWCNPPLQHFDLSQPVFQQIAQYRAGIVSVAYRRVPCQRKGGIRFTINGHSYFNLVLITNVGGAGDVTAVSIKGSRTGWQPMSRNWGQNWQSNSYLNGQSLSFKVTASDGRTVVSSDVAPPGWSFGQTFTGQQFP 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02117 252 PANTHER EXPANSIN 11 251 - -
Aip01g02117 252 SUPERFAMILY PHL pollen allergen 156 248 IPR036749 -
Aip01g02117 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 248 IPR007117 -
Aip01g02117 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 159 IPR007112 -
Aip01g02117 252 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Aip01g02117 252 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Aip01g02117 252 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Aip01g02117 252 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576
Aip01g02117 252 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576
Aip01g02117 252 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Aip01g02117 252 Gene3D - 158 251 IPR036749 -
Aip01g02117 252 Pfam Expansin C-terminal domain 160 237 IPR007117 -
Aip01g02117 252 SUPERFAMILY Barwin-like endoglucanases 28 177 IPR036908 -
Aip01g02117 252 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Aip01g02117 252 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Aip01g02117 252 PRINTS Expansin signature 98 108 IPR002963 GO:0009664
Aip01g02117 252 PRINTS Expansin signature 117 134 IPR002963 GO:0009664
Aip01g02117 252 PRINTS Expansin signature 134 147 IPR002963 GO:0009664
Aip01g02117 252 PRINTS Expansin signature 158 170 IPR002963 GO:0009664
Aip01g02117 252 PRINTS Expansin signature 170 191 IPR002963 GO:0009664
Aip01g02117 252 PRINTS Expansin signature 205 226 IPR002963 GO:0009664
Aip01g02117 252 PRINTS Expansin signature 234 250 IPR002963 GO:0009664
Aip01g02117 252 PANTHER EXPANSIN-A15 11 251 IPR002963 GO:0009664
Aip01g02117 252 Gene3D - 16 155 IPR036908 -
Aip01g02117 252 SMART dpbb_1 64 149 IPR007112 -
Aip01g02117 252 Pfam Lytic transglycolase 64 149 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02117 Aip-Chr1 114102934 114105297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02117 1 251 Expansin Gene Family AT2G03090 76.494 6.08e-145 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02117 - K20628 gmx:100816718 439.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02117 01 114102934 114105297 Aip10g02989 10 126171163 126176489 ECH
Aip05g01977 05 66469369 66472363 Aip01g02117 01 114102934 114105297 ECH
Aip03g04292 03 127322006 127323649 Aip01g02117 01 114102934 114105297 ECH
Aip01g02117 01 114102934 114105297 Aip01g02117 01 114102934 114105297 ECH