Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02104 ATGGCTTCTTGCAACTTCTTCAACCCTCAACAAATAGATGATCCTTTCCCACTTCCCCCCCAATTTTCCTTATATGATTATGATTATTATTCTTTCTGTGGAAACACTAACGAATATCCACCACTGGGATGTTGGGCACACGAGTTGGAGTGTTACCCTTCACTTCCTTTTTATGAAACTCTTTCCATCGAGCCAATTTCAACTATTAAAGACTGTGACTTTTATGATATCAAGAAAGGGTTTTCTGTCTGGAACGAAGTGGATGTCGGCTTTGATTGTTCGGAAAAAATTTCATCATCATCATCATCACTTTCCAACAATAACAATGAAGAAAATAAGAGCATCCGGAGGGTTATGAATAAACGAGTTTGTAGAGAAGAGAGAAGTAGCAACAGTACGAAAATGTTATCTAGGAAGATGATATCGGAGTATTTCTACATGCCAATAACTCAAGCAGCGAAGGAACTTGATGTGGGCTTAACTCTTTTAAAGAAGAGATGCAGAGAGTTAGGGATTCGAAGGTGGCCCCATCGGAAACTTATGAGCCTTCAAACCCTCATCACTAATGTTCAGGAGCTAGGGAAGGAAGAGGGGAGAGAGAGTGAAGAGAAGCTAAGGAATGCAATTGAGATATTGGAGAAGGAAAAGAAGCTTCTGGAAGAAATGCCTGATATGCAACTTGAGGACAATACCAAAAGGCTTAGGCAAGCATGCTTCAAGGCTAATTACAAGAAGAGGAAGCTCATGATGGGTTGTACTTCTTCAAATTCATCCGTGGAATCTTCGTCTTCATCATCATATCATATTATTGGACATAATGCATTAAGAACAGCTAGTCAGAGTAACACAATGGGTGGTGTTGAATTTATTAGCTTTGATGATGATGAAGATCAAGAACGAGACATCAAATCTGTGTTGTCTTTGCCTTCTTTGTCCCACAACATTCAAATGTGTTCTAGCTATATGTTTAATCACCCAAGTGCGACGTCTTCCTCAGCGGCAATCTTCCCTGGTGACCTCTCCTCCAACGACAATCTCCTCCTGCAACGGTCTCCTCCGGTGACATCTCCTACTGAGATAATCTCCTCCAGTGGCATTCTCCTATGCCGGCAATCTCATCCATCAAGCTACTGTGTTGTGAGATTCTTCTCCCACAAGCTCGCGAGAATATATGATAGATTTTGCGAAATAGCAACTACAACTACTAAAACTGTAGGAGCTAGGGTTTCTGAGGAAGGGATCGTTGAAACATTTCATAATGATGATGATGAAGCACTCGATGCTGCGAAGAATGGAGTTGTGGGCAAGAAAAATAGATTTTATATCGTTTCTGCTTTAGCTGATACCAAGGTAGATCTTAAAGTGCTATCTCAGCGGATTAGTTTAGGAAAAGGGGGTCTTAGAATGGCACCTGAAGAGGCTTTGAGTGAAATACTTCAGgacccaactctcttgaaggagaaggttaatcttgtctccttggaccttaggtgtgATGTTTGTTGGGAGAAAGAAGGGATTAATGGAGAGAAAAGCATAGCCTTGAGGAAAACTAAGTCTCAAATTTTTACAAATAGTTCTGCATGTAAATTAAAATTAGGAGATCTTAAAGGAGCATTATTCGATACTAAGTTTGCACTGCGTGGAGAAGACAACAATGTCAAAGCATTATTCCGGCAAGGACAGGCACATATGGCACTCTATGACATAGATGCTACAACTGAAAGCTTTAAAAAAGCACTAGTCTTAGAGCCAAATGATGGTTTCATTTTGCTCAACCTGTGGAGGTGA 1791 0.392 MASCNFFNPQQIDDPFPLPPQFSLYDYDYYSFCGNTNEYPPLGCWAHELECYPSLPFYETLSIEPISTIKDCDFYDIKKGFSVWNEVDVGFDCSEKISSSSSSLSNNNNEENKSIRRVMNKRVCREERSSNSTKMLSRKMISEYFYMPITQAAKELDVGLTLLKKRCRELGIRRWPHRKLMSLQTLITNVQELGKEEGRESEEKLRNAIEILEKEKKLLEEMPDMQLEDNTKRLRQACFKANYKKRKLMMGCTSSNSSVESSSSSSYHIIGHNALRTASQSNTMGGVEFISFDDDEDQERDIKSVLSLPSLSHNIQMCSSYMFNHPSATSSSAAIFPGDLSSNDNLLLQRSPPVTSPTEIISSSGILLCRQSHPSSYCVVRFFSHKLARIYDRFCEIATTTTKTVGARVSEEGIVETFHNDDDEALDAAKNGVVGKKNRFYIVSALADTKVDLKVLSQRISLGKGGLRMAPEEALSEILQDPTLLKEKVNLVSLDLRCDVCWEKEGINGEKSIALRKTKSQIFTNSSACKLKLGDLKGALFDTKFALRGEDNNVKALFRQGQAHMALYDIDATTESFKKALVLEPNDGFILLNLWR 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02104 596 ProSiteProfiles TPR repeat profile. 554 587 IPR019734 GO:0005515
Aip01g02104 596 SMART tpr_5 554 587 IPR019734 GO:0005515
Aip01g02104 596 Gene3D - 416 483 IPR036754 GO:0002161
Aip01g02104 596 ProSiteProfiles RWP-RK domain profile. 119 203 IPR003035 -
Aip01g02104 596 Coils Coil 195 222 - -
Aip01g02104 596 Gene3D Tetratricopeptide repeat domain 492 594 IPR011990 GO:0005515
Aip01g02104 596 PANTHER PROTEIN RKD4 57 263 IPR044607 GO:0003700
Aip01g02104 596 SUPERFAMILY YbaK/ProRS associated domain 434 480 IPR036754 GO:0002161
Aip01g02104 596 PANTHER PROTEIN RKD1-RELATED 57 263 - -
Aip01g02104 596 Pfam RWP-RK domain 136 183 IPR003035 -
Aip01g02104 596 SUPERFAMILY TPR-like 509 594 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02104 Aip-Chr1 113730349 113742578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02104 122 247 AtRKD Transcription Factor Family AT1G18790 69.531 7.31e-55 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Aip01g02104 RWP-RK 4.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02104 - - adu:107470725 578.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02104 01 113730349 113742578 Aip01g02104 01 113730349 113742578 ECH
Aip01g02104 01 113730349 113742578 Aip01g02104 01 113730349 113742578 PCT