Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02102 ATGAAAAAGCGGCAAGTGGTGATGGTGAGAAGAGATGCTTCTGCTTCGGATAATAATAACAATAATAATAATAATGTTGTTAAGTACGGAGAGTGTTTGAAGAATCATGCTGCCAATAGCGGAGGATATGCCGTGGATGGTTGCAGAGAGTTCATGGCTAGCGCCGCCGAGGGAACCACCGGGGCTCTTACCTGCGCCGCTTGTGGCTGCCATAGAAACTTCCATAGAAGAAAGGAACTAGCTGCACCATCCAGACAAAATATATGGGAGACATAG 276 0.4638 MKKRQVVMVRRDASASDNNNNNNNNVVKYGECLKNHAANSGGYAVDGCREFMASAAEGTTGALTCAACGCHRNFHRRKELAAPSRQNIWET 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02102 91 Pfam ZF-HD protein dimerisation region 27 79 IPR006456 -
Aip01g02102 91 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 28 78 IPR006456 -
Aip01g02102 91 MobiDBLite consensus disorder prediction 1 22 - -
Aip01g02102 91 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 20 80 - -
Aip01g02102 91 PANTHER MINI ZINC FINGER PROTEIN 2 20 80 - -
Aip01g02102 91 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 29 78 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02102 Aip-Chr1 113687911 113691864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02102 1 78 Zinc finger-homeobox gene family AT3G28917 59.036 2.23e-27 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Aip01g02102 ZF-HD_dimer 2.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02102 - - adu:107468004 162.54