Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02100 ATGGGGAGGCCACCTTGCTGTGAGAAAATTGGGATCAAGAAAGGGCCTTGGACTCCTGAGGAAGACATCATCTTAGTCTCTTATATCCAAGAACATGGACCTTCCAATTGGAGATCCGTTCCCACCAATACAGGGTTGATGAGATGCAGTAAGAGCTGCAGGCTTAGATGGACTAATTATCTTCGACCAGGTATCAAAAGAGGTAACTTCACCGACCATGAGGAGAAGATGATTATCCACCTCCAAGCCCTTTTAGGGAATAGATGGGCTGCTATAGCATCCTACCTTCCACAAAGAACGGACAATGATATTAAGAATTACTGGAACACGCATCTCAAGAAGAAGCTCGCCAAGAATCAAAGCGGAGCGGCCGAAGACGGCGGCGACTACCAAGATGGAAACTCTTCAAGATCCCAGCCAAAGGGACAGTGGGAGAGAAGGCTTCAGACAGATATTCACATGGCCAAACAAGCCCTGTCTGAAGCCTTGTCCCTCAGCAAATCCTCCAATAATAACAACAATGTCTTATCTGAGTCGTCATCATCTTATGATGCTTCCACATTTGTCACAAGAACAAGCCAGGCTGCTTCTTCTTCTTCTTCGTACGCCTCAAGCTATGAAAACATATCCAAGTTGCTGGAGAATTGGATGAAATCCCCGAACTTGTGTGCTGAAATGACCACAAATTCGGGAAATTCATTTAGTTCTAATAACAGCGAAGCAGATCATGGCTTTGATTCTCTCTTGAGCTTCAAATCCGACGATGAAAGGAAACCAAAGTACTTGTCCTCATCAGAGGCGCAGCAACAGGTGCCTCTAACGTTGCTCGAGAAGTGGCTCTTTGATGATGGTGCTGCTCAGTGCCATGAAGATCTTATGAACATGTCATTGGAGGAAAGTACTTCAGGTTTGTTCTAG 918 0.4542 MGRPPCCEKIGIKKGPWTPEEDIILVSYIQEHGPSNWRSVPTNTGLMRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLAKNQSGAAEDGGDYQDGNSSRSQPKGQWERRLQTDIHMAKQALSEALSLSKSSNNNNNVLSESSSSYDASTFVTRTSQAASSSSSYASSYENISKLLENWMKSPNLCAEMTTNSGNSFSSNNSEADHGFDSLLSFKSDDERKPKYLSSSEAQQQVPLTLLEKWLFDDGAAQCHEDLMNMSLEESTSGLF 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02100 305 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 290 - -
Aip01g02100 305 CDD SANT 69 112 IPR001005 -
Aip01g02100 305 Gene3D - 69 140 - -
Aip01g02100 305 CDD SANT 16 61 IPR001005 -
Aip01g02100 305 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Aip01g02100 305 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aip01g02100 305 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aip01g02100 305 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Aip01g02100 305 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aip01g02100 305 MobiDBLite consensus disorder prediction 118 146 - -
Aip01g02100 305 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 290 - -
Aip01g02100 305 SMART sant 66 114 IPR001005 -
Aip01g02100 305 SMART sant 13 63 IPR001005 -
Aip01g02100 305 Gene3D - 13 66 - -
Aip01g02100 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Aip01g02100 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02100 Aip-Chr1 113603233 113604737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02100 1 305 MYB Transcription Factor Family AT5G62470 52.661 2.03e-108 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip01g02100 Myb_DNA-binding 1.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02100 K09422 - gmx:100799402 391.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02100 01 113603233 113604737 Aip01g02100 01 113603233 113604737 ECH