Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02087 atggagggaggtgatgacttccaccaccatcaccatcatcaccaacaccaccaccaccgACAGAACTTCCCCTTCCAACTTCTAGAGAAGAAAGAAGATCAAGAAGCAGCGTCATGCTCAACTTCCTCCCCTTACCCTTCCCTAGCTATCTCATCTGCAGAACCATCCACTTCGAATTCAAACCGATCGAATCCAAACAGCAACACTGCAAACAACAACAATAACAACAGCAACAACAACCAATTAGCCTTACAACAAGAACAGCAAATACAGCCTTCTTTATCCTCTGAACCTTCTGGAAAGAAGCCTCCTCCTAAGCGGACATCCACCAAGGACCGCCATACAAAAGTTGACGGCCGTGGCCGCCGCATCCGAATGCCAGCTCTCTGTGCAGCCAGGGTGTTCCAGCTGACACGAGAGCTCGGCCACAAGTCCGATGGCGAGACCATCGAGTGGCTCCTCCAGCAGGCGGAGCCAGCCGTGATCGCCGCCACCGGAACCGGAACAATCCCCGCAAACTTCACGTCCCTCAACATCTCCCTCCGCAGCAGCGGTTCCTCCATGTCCGTACCATCCCAGCTCCGATCCTCATACTTCAGCCCTAACTTCCCCCTCCAAAACCGCCGAACCTTGTTCCCCGGAATAACCCTCTCGTCCGACACCACCACCGCCAGTAACAACAACAACAACAGCAACAACAACACCACCACTCTCCTTAACTTCCAACAGCAACAGCAAACCCTAACCGCAAATATTTTCAAGCAAGAACTGAGAGAGAGCCATGGCGCTCCCTCTTCTTCTTCCACGTTGGATTTATCTGAAACAAGCGCGGAAGAAGGTTCGCTAGGGAGAAAGAGAAGGCCGCCATCGGAACACGACCTATCTTCTTCAGCACAGCACCAAATGGGAAGCTACCTGCTGCAATCAAGCGCAGGCGCGATTCAGGCGAGCCACGCAGCTCAGATTCCGGCCAACATATGGATGGTGGCGAATTCCCAAAATGCCCCTCAGGTTATGAGCGGTGACCCTATATGGACGTTTCCAACGCAGGTTAGTAACAGTGGGTTGTACCGTGGAACCGTTTCCAGTGGTTTGCACTTTATGAACTTCCCTACTCCTATGGCTTTGTTGCCGAGTCAGCAATTAGGTTCTTCCGGTGGCGGAGGCAGTGTCAACGAAAGCCATTTGAATATGATCGCCGGTCTCGGCAGTTACCGTCCGGTCATCGGAGTTTCAGAATCGTCTCAGGCCAGTGGCTCTCATCAACATCATCGAGATGGAACCGATGATCGACACGATAGTACCAGCCACCACTCTTGA 1320 0.5015 MEGGDDFHHHHHHHQHHHHRQNFPFQLLEKKEDQEAASCSTSSPYPSLAISSAEPSTSNSNRSNPNSNTANNNNNNSNNNQLALQQEQQIQPSLSSEPSGKKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSSYFSPNFPLQNRRTLFPGITLSSDTTTASNNNNNSNNNTTTLLNFQQQQQTLTANIFKQELRESHGAPSSSSTLDLSETSAEEGSLGRKRRPPSEHDLSSSAQHQMGSYLLQSSAGAIQASHAAQIPANIWMVANSQNAPQVMSGDPIWTFPTQVSNSGLYRGTVSSGLHFMNFPTPMALLPSQQLGSSGGGGSVNESHLNMIAGLGSYRPVIGVSESSQASGSHQHHRDGTDDRHDSTSHHS 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02087 439 ProSiteProfiles TCP domain profile. 110 164 IPR017887 -
Aip01g02087 439 MobiDBLite consensus disorder prediction 258 299 - -
Aip01g02087 439 MobiDBLite consensus disorder prediction 412 439 - -
Aip01g02087 439 MobiDBLite consensus disorder prediction 216 236 - -
Aip01g02087 439 MobiDBLite consensus disorder prediction 104 123 - -
Aip01g02087 439 MobiDBLite consensus disorder prediction 1 124 - -
Aip01g02087 439 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 12 439 IPR005333 GO:0003700
Aip01g02087 439 PANTHER TRANSCRIPTION FACTOR TCP14-LIKE 12 439 - -
Aip01g02087 439 MobiDBLite consensus disorder prediction 258 276 - -
Aip01g02087 439 MobiDBLite consensus disorder prediction 419 439 - -
Aip01g02087 439 MobiDBLite consensus disorder prediction 278 293 - -
Aip01g02087 439 MobiDBLite consensus disorder prediction 22 36 - -
Aip01g02087 439 Pfam TCP family transcription factor 108 247 IPR017887 -
Aip01g02087 439 MobiDBLite consensus disorder prediction 37 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02087 Aip-Chr1 113187005 113189030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02087 95 381 TCP Transcription Factor Family AT3G47620 47.714 9.86e-62 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Aip01g02087 TCP 2.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02087 - - pvu:PHAVU_003G190900g 471.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02087 01 113187005 113189030 Aip01g02087 01 113187005 113189030 ECH
Aip05g01815 05 42436013 42438122 Aip01g02087 01 113187005 113189030 PCT