Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02079 ATGTCTAGCAGAAGGTCAAGGCAGACAAGTGGTTCAAGCAATATCAGTGACGATCAGATAAAGGATCTTGTCTCCAAGTTACAGCAGCTTCTTCCTGAGATTCGCCATACACGCACTGACAAGGTGTCATCTGCGAAGGTGTTGCAAGAAACATGCAACTATATAAGAAGCTTACACAGAGAAGTTGATGATCTTAGCGAGCGTTTGTCGGAGTTGTTGGCAACAACTGACACCGCCCAAGCGGCATTGATTAGAAATTTACTTCTGCAGTAG 273 0.4469 MSSRRSRQTSGSSNISDDQIKDLVSKLQQLLPEIRHTRTDKVSSAKVLQETCNYIRSLHREVDDLSERLSELLATTDTAQAALIRNLLLQ 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02079 90 Coils Coil 55 75 - -
Aip01g02079 90 CDD bHLH_AtPRE_like 10 75 - -
Aip01g02079 90 Pfam Helix-loop-helix DNA-binding domain 18 59 IPR011598 GO:0046983
Aip01g02079 90 PANTHER TRANSCRIPTION FACTOR PRE3 1 88 - -
Aip01g02079 90 PANTHER TRANSCRIPTION FACTOR PRE 1 88 IPR044293 GO:0006355|GO:0040008|GO:0046983
Aip01g02079 90 Gene3D - 17 86 IPR036638 GO:0046983
Aip01g02079 90 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 58 IPR011598 GO:0046983
Aip01g02079 90 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 18 76 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02079 Aip-Chr1 112378678 112380022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02079 15 90 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G74500 77.922 8.72e-37 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip01g02079 HLH 2.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02079 - - gmx:100527636 142.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g01786 05 38678568 38680194 Aip01g02079 01 112378678 112380022 ECH
Aip03g04251 03 126743440 126744422 Aip01g02079 01 112378678 112380022 ECH
Aip01g02079 01 112378678 112380022 Aip01g02079 01 112378678 112380022 ECH