Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02078 ATGCACCCTCGGTCCCACTCACAGCTCACGAATGGTGTCGCCACCTTTCCTCTCTCAGTCCTCTCTTTGCCTCTCACCATCTGCCATCACCCTTTCCCTCTCAACCCTCTCTTTGTCTCTAACCAGCCAGCATCACGGCTCTCGTCACCACTCACCAGCATCAGAGTCACGACGGTGCTGTGCTGCTTCTCGCCTCTCAGTGATGACGAGTTGACGACCCTCAACGACAATGAACACAAATCCACATATTGCTTGAGTTTGTATGAACACTGCAAAACTACTCCCCACACAACACATATTTATTCTCAAGCCTTGGAGAAGCTTGCCCCACACATTCAACAGGTTAGCATGGAAAGTAATGGAAAGGGAGTTTTGATTGATGGGGTACCTCTACCATTTGAACCTGGTGAGATTGATTTTGGTGAGGTAGGGAGCAATCATGATGAGCTAATGTCAAGTTTCTTTGCACAACCAGATGCCCTTGCCTATGAGAAGGATCGTTGCCCTCGTCTCCTTTCTACGCTCTCCAAAATCCAAACTTCTCTTCTTCGCTTCTACGTCGTTCATGGCTTGCAAGCCAATCGCAGGGACAGAGTCATAGACTTCTTCGCTGTCTATGGCAGTGACCTCTTGCAACGCTCACATGATTGGACTCGCTGGTTCGGCGCGTTTTGCTGTCGACAGAGACGGCAACGTGGGACTGGGCGGCAAGGTTGTGGACCTCGTTCGGGAGAAgaagAAAGTTCTGATATCACCACGCCATACCCAAATAATCCTATAGGTGCTACAAAAGGAGGTTATTATAGAAAAAGAAGCACATTATTGTTACCACCACCACCAATACAACATGTTGATGATGATGATTATGGTAAAGATGATGAGATTGTTCTAGCAACATCAAGATCTGAAGGCGACATACTACTAATTTCATCCCCTCATTTAAAATCCTTCACATTCAATAATCTTAAGAATGTTACTGGAAACTTTGATCATGAGAATCTAATAGGAGAAGGTGGATTTGGTTATGTTTATAAGGGATGGATTAATGCTCATTCATTTGACCCTACCTTTGGAATTGGAACTGTTGTTGTAGCTGTAAAGAAGCTTAAACCTCAAGGTTTTCAAGGTCATAAGGAGTGGTTGAGTGAAGTAAATCATCTTGGACAACTTCATCATCCAAATCTAGTGAGACTTATTGGATACTGTTTTGAAGGGGATAATCGACTTCTGGTGTATGAATACATGCCAAAAGGAAGCTTAGAAAATCACCTATTTCATAAGGGGAATGAAACGCTTCCTTGGACAACAAGAATGAAAGTTGCTATTGATGCTGCTAGAGGACTAACCTTCCTACATGAATCTGAGCAACAAGTCATCTACCGAGACTTCAAGACTTCTAACATTTTATTAGATTTGGAATTTAATGCAAAACTTTCTGATTTTGGATTGGCGAAAGCAGGGCCCATTGGTGATCGAAGTCATGTTTCTACTCAGGTCTTGGGCACTGTAGGTTATGCTGCTCCTGAATATATCCTTACAGGTCGGCTAACTACAAAATGTGACGTGTATAGTTTTGGAGTAGTACTATTGGAATTACTAACTGGACGGCGTGCAATTGAGGTAACAAAATCTGGGATGGAACATAATCTTGTGGAATGGGCAAAACCCTATTTGGGTGATAGGAGGAAGTTGTTCAGGATCATGGACACTAAGTTAGCAGGACAATACTCACAAAGGGCAGCTTATATAGTTGCTCTTCTTGCTTTGCAATGCATTAGTGAGCCCAAGTTCAGGCCTCAGATGCTTGATATTTTATCTACTTTAGAAAGGCTTCCACTAACTAGTAATAACCACTCACATAGGCCCAAGAATAGGCCCATATCATCAAGCCCAAGGTTACCCAGGGCCCCTAATCAATTGGTTTTGTCTCCTTTGAGATATAATAATAGTAATAATGATAATTATTATTCACCATACAACACCGGCAGGTCACCCCTCTTGCAACCCACGCATCATTATTAA 2022 0.4288 MHPRSHSQLTNGVATFPLSVLSLPLTICHHPFPLNPLFVSNQPASRLSSPLTSIRVTTVLCCFSPLSDDELTTLNDNEHKSTYCLSLYEHCKTTPHTTHIYSQALEKLAPHIQQVSMESNGKGVLIDGVPLPFEPGEIDFGEVGSNHDELMSSFFAQPDALAYEKDRCPRLLSTLSKIQTSLLRFYVVHGLQANRRDRVIDFFAVYGSDLLQRSHDWTRWFGAFCCRQRRQRGTGRQGCGPRSGEEESSDITTPYPNNPIGATKGGYYRKRSTLLLPPPPIQHVDDDDYGKDDEIVLATSRSEGDILLISSPHLKSFTFNNLKNVTGNFDHENLIGEGGFGYVYKGWINAHSFDPTFGIGTVVVAVKKLKPQGFQGHKEWLSEVNHLGQLHHPNLVRLIGYCFEGDNRLLVYEYMPKGSLENHLFHKGNETLPWTTRMKVAIDAARGLTFLHESEQQVIYRDFKTSNILLDLEFNAKLSDFGLAKAGPIGDRSHVSTQVLGTVGYAAPEYILTGRLTTKCDVYSFGVVLLELLTGRRAIEVTKSGMEHNLVEWAKPYLGDRRKLFRIMDTKLAGQYSQRAAYIVALLALQCISEPKFRPQMLDILSTLERLPLTSNNHSHRPKNRPISSSPRLPRAPNQLVLSPLRYNNSNNDNYYSPYNTGRSPLLQPTHHY 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02078 673 Gene3D - 80 148 - -
Aip01g02078 673 SUPERFAMILY Protein kinase-like (PK-like) 306 609 IPR011009 -
Aip01g02078 673 SUPERFAMILY SIS domain 85 163 IPR046348 GO:0097367|GO:1901135
Aip01g02078 673 Pfam Protein tyrosine and serine/threonine kinase 332 546 IPR001245 GO:0004672|GO:0006468
Aip01g02078 673 Gene3D Phosphorylase Kinase; domain 1 302 414 - -
Aip01g02078 673 PANTHER BNAC02G17010D PROTEIN 295 630 - -
Aip01g02078 673 MobiDBLite consensus disorder prediction 652 667 - -
Aip01g02078 673 PANTHER OS01G0588500 PROTEIN-RELATED 295 630 - -
Aip01g02078 673 Gene3D Transferase(Phosphotransferase) domain 1 415 628 - -
Aip01g02078 673 ProSitePatterns Protein kinases ATP-binding region signature. 335 368 IPR017441 GO:0005524
Aip01g02078 673 MobiDBLite consensus disorder prediction 232 262 - -
Aip01g02078 673 Pfam Phosphoglucose isomerase 95 147 IPR001672 GO:0004347|GO:0006094|GO:0006096
Aip01g02078 673 MobiDBLite consensus disorder prediction 652 673 - -
Aip01g02078 673 ProSiteProfiles Protein kinase domain profile. 329 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g02078 673 MobiDBLite consensus disorder prediction 614 635 - -
Aip01g02078 673 CDD STKc_IRAK 335 611 - -
Aip01g02078 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02078 Aip-Chr1 112328576 112341081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02078 315 608 Glycoside Hydrolase AT3G07070 51.007 2.98e-93 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Aip01g02078 PK_Tyr_Ser-Thr 2.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02078 - - adu:107470619 505.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02078 01 112328576 112341081 Aip01g02078 01 112328576 112341081 ECH
Aip05g01770 05 36628280 36631096 Aip01g02078 01 112328576 112341081 PCT