Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02059 ATGGAAGGTAAAATGCTTATATTGGTGTTGTTATGTGTGTTCCCTACCTTAAATGCTAATATAGCTGAATTCGACCAAGTATGGATGGAGCGATCTATAGAAGCCAAAAAAGCAGCTCGCAAGGCTTTCAAGCCAAACCCTGAGGCAGTCACTGATGAATTCAATCAACATGTCAACAAGGTCCTTAAAGGTTCCAATAAAACGAGAAGGGGTTTATCCGCCAAATACAAAGGTCCATGTATGGCTACAAATCCCATTGACCGTTGCTGGAGATGTGACCCCAATTGGGAGAAAAACCGCCAACGGTTAGCAGACTGTGCTATTGGTTTCGGCCATGGCACGACGGGCGGCAAAGGTGGCAAAATCTACGTTGTCAATGATCCCTCAGATCATGATCTCCTCAACCCGAAACCTGGGACTCTGCGATTCGCAGTGATTCAGAAGGAGCCATTGTGGATCATTTTTAAACATGACATGACCATCAAGCTTAGTAGTGAGCTTATAGTCACTAGTCACAAGACCATAGATGCACGTGGTGCCAATGTTCACATTGCCAATGGTGCCCAAATGACGCTACAGTTTGTGAAGAACATAATCGTTCATGGACTGCATATTCACGGCATCAGGAAACATGCCGGCGGCATGATAAGAGACTCGGTCGACCACTTTGGAATCCGCACTGAGAGCGATGGGGATGGGCTTTCATTGTTTGGAGCTACAAACATTTGGATTGATCATGTTTCTCTGTCAAATTGTGATGATGGACTTATTGATGCCGTTGCTGGATCAACAGCTATTACCATATCCAACTGCCACATGACTCGCCATAATGATGTTATATTACTTGGTGCAAGTGATGCCTACTCAGGAGATCAAATCATGCAAGTAACATTGGCATTCAACCATTTTGGGCAAGGATTGGTGCAGAGGATGCCAAGGTGCAGATGGGGTTTCTTCCATATTGTCAACAATGACTACACTCACTGGCTTATGTATGCCGTCGGTGGTAGCCAACATCCCACCATCGTCAGCCAGGGCAACCGATTTATCGCACCTCCAAACCCAGCTGCAAAAGAGGTTACCAAGAGGGATTATGCTCCTCAAAGTGTGTGGAAAAATTGGAATTGGAGATCAGAGGGTGACTTAATGCTGAATGGAGCCTTCTTTGTTGAGTCTGGGACGAAGGTTACAAATTTTCCCAAATCAGGAGGTATTACTGCAAAGCCTGGGAGTTTCACATCAAGTCTCACTCGCTTTGCAGGTCCTCTCAAATGTGTAGTACACAAGCCATGCTGA 1296 0.4545 MEGKMLILVLLCVFPTLNANIAEFDQVWMERSIEAKKAARKAFKPNPEAVTDEFNQHVNKVLKGSNKTRRGLSAKYKGPCMATNPIDRCWRCDPNWEKNRQRLADCAIGFGHGTTGGKGGKIYVVNDPSDHDLLNPKPGTLRFAVIQKEPLWIIFKHDMTIKLSSELIVTSHKTIDARGANVHIANGAQMTLQFVKNIIVHGLHIHGIRKHAGGMIRDSVDHFGIRTESDGDGLSLFGATNIWIDHVSLSNCDDGLIDAVAGSTAITISNCHMTRHNDVILLGASDAYSGDQIMQVTLAFNHFGQGLVQRMPRCRWGFFHIVNNDYTHWLMYAVGGSQHPTIVSQGNRFIAPPNPAAKEVTKRDYAPQSVWKNWNWRSEGDLMLNGAFFVESGTKVTNFPKSGGITAKPGSFTSSLTRFAGPLKCVVHKPC 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02059 431 Pfam Pectate lyase, N terminus 20 72 IPR007524 GO:0030570
Aip01g02059 431 Pfam Pectate lyase 165 349 IPR002022 -
Aip01g02059 431 PRINTS Pollen allergen Amb family signature 106 123 IPR018082 -
Aip01g02059 431 PRINTS Pollen allergen Amb family signature 130 155 IPR018082 -
Aip01g02059 431 PRINTS Pollen allergen Amb family signature 166 182 IPR018082 -
Aip01g02059 431 PRINTS Pollen allergen Amb family signature 230 251 IPR018082 -
Aip01g02059 431 PRINTS Pollen allergen Amb family signature 310 329 IPR018082 -
Aip01g02059 431 PRINTS Pollen allergen Amb family signature 332 351 IPR018082 -
Aip01g02059 431 PRINTS Pollen allergen Amb family signature 374 398 IPR018082 -
Aip01g02059 431 PANTHER PECTATE LYASE 6 431 - -
Aip01g02059 431 SMART amb_all 158 355 IPR002022 -
Aip01g02059 431 Gene3D - 83 424 IPR012334 -
Aip01g02059 431 PANTHER PECTATE LYASE 18-RELATED 6 431 IPR045032 GO:0030570
Aip01g02059 431 SUPERFAMILY Pectin lyase-like 84 422 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02059 Aip-Chr1 110787194 110790019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02059 5 431 Polysaccharide Lyase AT5G15110 53.780 0.0 525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02059 K01728 - gmx:100801864 668.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02059 01 110787194 110790019 Aip10g02949 10 125092826 125097154 ECH
Aip03g04230 03 126534008 126535975 Aip01g02059 01 110787194 110790019 ECH
Aip01g02059 01 110787194 110790019 Aip01g02059 01 110787194 110790019 ECH