Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02047 ATGGCGGGTGGGAGGCTCTTCAGCTCTGCCTTCTCCAACACCAACAACAGTAACACTCTTCTTCTTCATCAGAACCAAGCTTCCCAGCCTCTTCCTCCTCCGTCTCTCTTCCTATCTTCATCACTTCCTTTTCTCGGTTCTCGATCCATGGTGAGCTTCGAAGATGTTCCAGGAGGGAAGGGGTGTAAAAATGGGTCGTTCTTCCGGACATACGACCCGGCGGAGGAGGACGGGGAGGAGAGCATGGAGGAGTACTTGACGCAGCCGGCGGAGAAGAAGCGGCGGCTATCGGCGGAGCAAGTTGAGTTCCTGGAGAAGAGCTTCAAGGAAGAGAACAAGCTGGAGCCAGAGAGGAAGACAAAGCTGGCTAAGGAACTTGGGCTGCAGCCGCGGCAGGTGGCGATATGGTTCCAGAACCGCCGCGCACGGTGGAAGACGAAGCAGCTGGAGAAGGATTATGATTCCCTTCAGGCTACCTTTGACACCCTTAAGGCCAACTATGATAACCTCCTCAAGGAGAAAGATCGCTTGAAAGCAGAGGTAGCAAGGCTGACGGAGAAGGTGGTTGCAATGGAGAAAGAAGGCGAAGACAAGAGTGAAAGAAAGGGAATGCAGGAGGCAACCGCAGCAGCAGTTTCATCAGAAGGCGAAGGGTCCAAGATATCAGTGAAGAGTGATATGTTGGATTCCGATGACAATATAAATAGCCCCTACTACCACACAACCTCTGGAATGTTCGAGGCCGATCAATCGGATCTGTCACAGGACGAGGAAGAGAATCTCATAAGTCGGAGCCTCTTGCATCCATACCTCATCTTCCCTAAACTTGAGCATGTTGAATACTCCGACCCGCCTGAGACTTCATGTAACTTTGGATTCGCTCATGAAGATCATGCTATTTGGTCCTGGTCTTATTGA 918 0.5142 MAGGRLFSSAFSNTNNSNTLLLHQNQASQPLPPPSLFLSSSLPFLGSRSMVSFEDVPGGKGCKNGSFFRTYDPAEEDGEESMEEYLTQPAEKKRRLSAEQVEFLEKSFKEENKLEPERKTKLAKELGLQPRQVAIWFQNRRARWKTKQLEKDYDSLQATFDTLKANYDNLLKEKDRLKAEVARLTEKVVAMEKEGEDKSERKGMQEATAAAVSSEGEGSKISVKSDMLDSDDNINSPYYHTTSGMFEADQSDLSQDEEENLISRSLLHPYLIFPKLEHVEYSDPPETSCNFGFAHEDHAIWSWSY 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02047 305 PRINTS Lambda-repressor HTH signature 118 127 IPR000047 GO:0003677
Aip01g02047 305 PRINTS Lambda-repressor HTH signature 127 143 IPR000047 GO:0003677
Aip01g02047 305 ProSitePatterns 'Homeobox' domain signature. 122 145 IPR017970 GO:0000981|GO:0006355
Aip01g02047 305 CDD homeodomain 92 148 IPR001356 GO:0003677
Aip01g02047 305 ProSiteProfiles 'Homeobox' domain profile. 87 147 IPR001356 GO:0003677
Aip01g02047 305 MobiDBLite consensus disorder prediction 192 227 - -
Aip01g02047 305 Coils Coil 139 194 - -
Aip01g02047 305 SUPERFAMILY Homeodomain-like 82 149 IPR009057 -
Aip01g02047 305 Gene3D - 95 141 - -
Aip01g02047 305 Pfam Homeobox associated leucine zipper 147 188 IPR003106 GO:0006355|GO:0043565
Aip01g02047 305 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 24 302 IPR045224 GO:0003700
Aip01g02047 305 Gene3D - 142 193 - -
Aip01g02047 305 SMART HOX_1 90 151 IPR001356 GO:0003677
Aip01g02047 305 Pfam Homeodomain 92 145 IPR001356 GO:0003677
Aip01g02047 305 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-54 24 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02047 Aip-Chr1 110273847 110276054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02047 36 231 Homeobox Transcription Factor Family AT3G01470 46.154 5.24e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aip01g02047 Homeodomain 4.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02047 - - gmx:732618 326.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02047 01 110273847 110276054 Aip01g02047 01 110273847 110276054 ECH