Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02024 ATGACCCTTAAGGGTGGAACCACACAGGCCTGCGCTGCATGCAAATTTCAGAGAAGAAAGTGCACTCCTGAGTGTCTTCTTGCACCATACTTCCCTGCAGACCAACCAAAAGTGTTCCTTAATGTCCACAAGCTATTTGGGGTGAGCAACATTGTGAAAATATTAAAGGACGTGGATCCTAGTCAGAAGAAGAATGCTATGGAGTCCATCATCGTTCAAGCTAGTTATCGCGATAAGTACCCGGTTCGTGGTTGCGTGGAAGAAATTTGCAGGCTGCAAAACCAAATTTGGCTGCACGAAGAAGAGCTTCATGCTGTGTATCAGCAGCTTGAGATGTGCAGGCAACACCAACAGCAGCAGCACCAAGGGATTCATCACGTTGTTCCTGATGATCTTGCATCACAGTTAGAGTTGGGAATGGCGCCACGCGCTGCCAACAATGCTCTTCCGCTGTTTAATCACGCGCCACAGCCCCAGCAGCAGCAGCAGCAACAGGTTTACAATACTTCTGTGGCTGCTTTGCCTGTGTCACAGCAACATTCATATTCCAACAGCAACAGTGTGGATTATAACTCCCTTTACATTGAATCCAAGGAAAACAACAATAATGGAACAAATCCTTTGTGGGTACCTTATGCAAATAACAATGGAAGTCCCATAGCAATGCAGTCTCAGATGGTTACCTCACAGGCACTATCCATGCAGCAAGAAGCTGCTGGGGATTATGATGAGATGCATCCATTTTTCGAAACAATTGATGATAGGCAATCATATATTTATTCCAAGGAGGCTTATGAATCAAGCTCAGAAGAATCATTGAAAGATTCAAGAAAGTGCACCGAGCACGTTGCTGAGAATGAATTGAAGAGTGCTGCCGCATGCTTCAGCCTTACCAGTGTCAACTGA 906 0.4547 MTLKGGTTQACAACKFQRRKCTPECLLAPYFPADQPKVFLNVHKLFGVSNIVKILKDVDPSQKKNAMESIIVQASYRDKYPVRGCVEEICRLQNQIWLHEEELHAVYQQLEMCRQHQQQQHQGIHHVVPDDLASQLELGMAPRAANNALPLFNHAPQPQQQQQQQVYNTSVAALPVSQQHSYSNSNSVDYNSLYIESKENNNNGTNPLWVPYANNNGSPIAMQSQMVTSQALSMQQEAAGDYDEMHPFFETIDDRQSYIYSKEAYESSSEESLKDSRKCTEHVAENELKSAAACFSLTSVN 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02024 301 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Aip01g02024 301 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 277 - -
Aip01g02024 301 PANTHER LOB DOMAIN-CONTAINING PROTEIN 27-RELATED 4 277 - -
Aip01g02024 301 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02024 Aip-Chr1 108418075 108419098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02024 1 264 AS2 family AT3G47870 40.594 1.39e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aip01g02024 LOB 3.5e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02024 - - lang:109357116 377.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02024 01 108418075 108419098 Aip10g02938 10 124687564 124689395 ECH
Aip01g02024 01 108418075 108419098 Aip01g02024 01 108418075 108419098 ECH