Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02023 ATGCAGGTTTTTCCACTGGTGATACAAAAATTACCTACCGAAGAACAGGCTTCGCTTGTGTGGCAATTCATATGTAGTGTTCCTATAATATTGCTGGAGGAACTTTTACCATGGATGGTATCCTTCCTTTCCGAAGAGAAACAAGCAGAAGTCACTCAGTGTATAAATGAAATTGCACCAATGGAAAAAACACTCCAAGAGGTTTTGGTTTCTTGGATTGGAAGCAACAAACAAAGCTTCACTGAAGTCTCTTTTAAGGATGAAGTTCAAGGTGGTGCTCAATCCTTAGATATTGCAAGATCATTTCCGTTGGGTTCTTGCAATAGGAACTTCAAAGAACTTTCAAGTCAGATGGAAGTGAATGGCTCAAAAGACAAAGATGGGATCACCCAGGTTAATGTTCTTCATCTTTGGCATGATGCCATCATAAAGGATTTGGAAGAAATTCTGAAAGAACTTTGTTTAATAAAAAACTGCAGCTGCTTTCAGAATTTAGAATCACTGCTTATCCAACTGAAATTCTTTGCTGATGTCCTCACCTTCTACAGCAATGCTCAGAAAAGATTAGTATTGAAGAAACTTGCTGGTGACTGGTTGTCAAAGTCTACGGAACACTTTTGTGACGTAAGTCACATTGAAGATTTACAGCAGTTGTTATTCTATAGATCGGAAAGTGGAATGCCTTTGTGCGAATTCGTAGGGAACCTTTGTCAAAAACTTGACTCATTCGTATCAAGGCTCAGAAAGCAATTTGCTTTTCAAGAAAATGAGGTATTTCCTATCATTAGAAAGAATTGCAGCAATGGGATGCAAGAGGGACTTCTGAGCTTGAGCCTGTATATGATGCCACTTGGGTTAGTAAAGGGTGCTATAACTTGGTTTTCAGTTCACCTGCCTGAAAAAGAATCCAGGTCCATTCTCTATTTCAAAAAGAAAGGAAATCATGTTGCCTGTAAAGGTTTTGCATCGCTCTTACAAGAGTGGTTCCGCATTGGTTATTCAGGTAAAACTGCTATTGAAAAATTCCGACAGGACTTGCACCATATGTTCAAAAGCAAATACTCTTTCTTACCTGAGCAAATCAAGAAAGCGCCTGGGTTTTCTTTAAATTCTGACTGCCTGCCTCATAAGGTCTCTAGCAAGATGTGTCTGTCCTATCCCTCACCTTCGGGATCCAACAAGTACGAGACACCATACTCCACAGGAATTAATCTGCATATACTTTTTCCGGCCACAGTTGTTAAGTTGCATCAGAAGCTGGGATGCCATGCAGCAAATAGTTCTTCTGTTTCCTTTCTTGAAGATCCAAAACCAATTGACATAATTTTTTTCTTTCACAAGGCTATCAAGAAAGATTTGGACTACCTAGTTCTTGGCTCAGCTCAGTTAGAAGACAATGCTGAGTTGCTTATGGATTTCCACAAGCGATTCCACATCATATATTTTCTTTATCAAATCCATAGTGATGCAGAGGATGAAATAGTTTTCCCAGCTTTGGAGGCAAGTGGTAGGCTAAAAAACATTAGCCATGCCTATGCTTTCGATCACAATGTTGAAGTTAAACACTTCAATAAAATATCCCACATCCTTCATAAGATGTCTGTATTAGATATTTCGGTTTCTACATCCTTGGTAAGGTATCAGCATTTATGTAGGAAGCTGCAACAAATTTGCAAATCAATGCATAAATCACTTTCAGGCCATATTGACCGGGAGGAAGCTGAAATTTGGCCTCTAAGTAGAGAATTCTTCTCAAATAAAGAGCAAGGGAAGATCATAGGATGTATGCTTGGAAGAATAGGAGCACAGATATTGCAAGATATGATACCTTGGCTAATGGCATCGTTAACACAGAAAGAACAGCATGTTTTAATGTTCTTATGGTCCATGGCTACTAAAAATACAATGTTCAACGAGTGGTTAAGTGAATGGTGGGATGGGTACAGTATAACTAAGCCAGAAGAGGGAACAAAGCATGCACTTAAAGAGACTGTTGAGCCACTGGAGATTATATCTAAATACTTTTCTGAAGAAGTTCTTGATGAATTACAAGAAGAACCCTCATCCAACACAAATACTGATTTTCATCAGAAGGATCATATTGGTGATAATGTCCAGCTGTCTAACAACAAATTTGATGGCACCGTTAAGGTTCAAGCTGCAGCACAGAATAAAAATGAAATTTCAAAATCCACAAATCGTTTTCATGATAACAACAAACATGGTTGGAATCAAGAAAAGGAAGGAATCACAAATCCAATCAAAATTGAAGATCAATCATTTCAATTTCGTCACAATTCCAGGCATCATGACCGACTTCTGAAACTGAGTCAAGATGATCTGGAGAAAGCAATAAGAAGGGTAACTCGCGATTCCTGCTTAGATCCTCAAGAAAAGTCATACATAATACAGAACCTGCTAATAAGCCGTTGGATTATTAGACAGAAGATATCCTTTACAGAAGTTGATGTCAAAAATGATGAGCAGGAATTTCCTGGGAAGCATCCATCCTATAGGGATCCTCTCAAACTAATTTATGGTTGCAAACATTACAGGAGAAACTGTAAGATATTTTGCCCCTGTTGCAACCAACTTCATACTTGCATACATTGCCATAATGAGGTATCAGACCATATAATTGACAGGAAATCTATTACAAAAATGATGTGCATGGAGTGCTTAAACATTCAGCCCATTAATGCCACATGCTCAACTTCTTCCTGCAAGTTAACCATGGCAAAATATTACTGCTGGATCTGCAGATTATTTGAGGATGAAAAGGAAATTTACCACTGTCCCTATTGTAACCTGTGCCGAGTTGGGAAGGGCTTGGGTACCACGTACTTTCATTGCATGAGTTGCAATGCATGTATGTCGCGTAGTCTTTTGGTACACACATGCCGGGAAAAACATTTAGAGGACAACTGTCCAATTTGTCATGAATATATCTTCACATCCCTGGCTCCGGTAAAAGCCCTTCCATGTGGTCATGTGATGCACTCAGCATGCTTTCAGGAATATACCGGCTTTAACTATACCTGCCCCATATGTAGCAAGTCAATTGTAGACATGCAGGACTATTTTAAGAAGTTAGATTCTTTATTGGCCGAAGAGAAAATGTCTGATGAGCTTTCCAGTCGAACTCAGGTTATATTATGTAATGACTGCGAAAAGAAAGGAGTAGCTCCCTTCCACTGGCGTTACCACAAATGCCCTTATTGTGGTTCCTACAACACCAGAGTTCTATGA 3249 0.3906 MQVFPLVIQKLPTEEQASLVWQFICSVPIILLEELLPWMVSFLSEEKQAEVTQCINEIAPMEKTLQEVLVSWIGSNKQSFTEVSFKDEVQGGAQSLDIARSFPLGSCNRNFKELSSQMEVNGSKDKDGITQVNVLHLWHDAIIKDLEEILKELCLIKNCSCFQNLESLLIQLKFFADVLTFYSNAQKRLVLKKLAGDWLSKSTEHFCDVSHIEDLQQLLFYRSESGMPLCEFVGNLCQKLDSFVSRLRKQFAFQENEVFPIIRKNCSNGMQEGLLSLSLYMMPLGLVKGAITWFSVHLPEKESRSILYFKKKGNHVACKGFASLLQEWFRIGYSGKTAIEKFRQDLHHMFKSKYSFLPEQIKKAPGFSLNSDCLPHKVSSKMCLSYPSPSGSNKYETPYSTGINLHILFPATVVKLHQKLGCHAANSSSVSFLEDPKPIDIIFFFHKAIKKDLDYLVLGSAQLEDNAELLMDFHKRFHIIYFLYQIHSDAEDEIVFPALEASGRLKNISHAYAFDHNVEVKHFNKISHILHKMSVLDISVSTSLVRYQHLCRKLQQICKSMHKSLSGHIDREEAEIWPLSREFFSNKEQGKIIGCMLGRIGAQILQDMIPWLMASLTQKEQHVLMFLWSMATKNTMFNEWLSEWWDGYSITKPEEGTKHALKETVEPLEIISKYFSEEVLDELQEEPSSNTNTDFHQKDHIGDNVQLSNNKFDGTVKVQAAAQNKNEISKSTNRFHDNNKHGWNQEKEGITNPIKIEDQSFQFRHNSRHHDRLLKLSQDDLEKAIRRVTRDSCLDPQEKSYIIQNLLISRWIIRQKISFTEVDVKNDEQEFPGKHPSYRDPLKLIYGCKHYRRNCKIFCPCCNQLHTCIHCHNEVSDHIIDRKSITKMMCMECLNIQPINATCSTSSCKLTMAKYYCWICRLFEDEKEIYHCPYCNLCRVGKGLGTTYFHCMSCNACMSRSLLVHTCREKHLEDNCPICHEYIFTSLAPVKALPCGHVMHSACFQEYTGFNYTCPICSKSIVDMQDYFKKLDSLLAEEKMSDELSSRTQVILCNDCEKKGVAPFHWRYHKCPYCGSYNTRVL 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02023 1082 ProSiteProfiles Zinc finger RING-type profile. 976 1018 IPR001841 -
Aip01g02023 1082 ProSiteProfiles Zinc finger CHY-type profile. 841 910 IPR008913 GO:0008270
Aip01g02023 1082 CDD Hr-like 440 578 - -
Aip01g02023 1082 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 2 1082 - -
Aip01g02023 1082 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 969 1020 IPR013083 -
Aip01g02023 1082 SUPERFAMILY RING/U-box 963 1024 - -
Aip01g02023 1082 SMART ring_2 976 1017 IPR001841 -
Aip01g02023 1082 Pfam Ring finger domain 974 1017 IPR001841 -
Aip01g02023 1082 Pfam Zinc-ribbon 1022 1080 IPR039512 -
Aip01g02023 1082 Gene3D - 1047 1082 - -
Aip01g02023 1082 SUPERFAMILY Zinc hairpin stack 913 967 IPR037275 -
Aip01g02023 1082 CDD RING-H2_Pirh2 975 1018 - -
Aip01g02023 1082 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 2 1082 - -
Aip01g02023 1082 Gene3D nmb1532 protein domain like 434 597 - -
Aip01g02023 1082 Pfam CHY zinc finger 848 922 IPR008913 GO:0008270
Aip01g02023 1082 ProSiteProfiles Zinc finger CTCHY-type profile. 912 975 IPR017921 -
Aip01g02023 1082 SUPERFAMILY CHY zinc finger-like 839 904 IPR037274 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02023 Aip-Chr1 108409262 108416112 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02023 2 673 C2H2 Transcription Factor Family AT3G18290 29.032 1.11e-90 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02023 K16276 - gmx:100802706 1634
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02023 01 108409262 108416112 Aip01g02023 01 108409262 108416112 ECH