Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g02006 ATGGAAGGTCCTGTCATCAACGAGTCCACATTCTCCTCCGCCAACCCTTCCTCTTACTCTCTCTCTGAGATTTGGCCCGCCACCGCAACCACCTTCACTCCCATCCACAACCATAAGAGGAAGGAATCATCCCCCTCCTCCTCCACCACCACCGCCACCGCCAATCACTTGAATGATTCGTACGGCAATAAGCATAGGAAACTGGAAGGATCCTTCCAGGAGGAAAACCGTGCTGGCGATTCAAAAGCCGTGGTAGGTGCCAGTTTAGTTGCCGGTAACAAGTTAGCTCGGGAAGGTGGTGGTGGCGGCGGAGGCGGCGGCGCTGCTAAGCCTTCTTGTGAGCAACCGCCTAAACAAGACTACATCCATGTGAGAGCCAGGAGAGGCCAGGCTACCGATAGCCACAGTCTCGCTGAGAGAGCCAGGAGAGAAAAGATTAGTGAGAGGATGAAAATTCTTCAAGATTTAGTCCCTGGATGTAACAAGGTAATTGGCAAAGCACTTGTGTTAGATGAGATAATCAATTACATACAGTCGCTGCAGCGTCAGGTTGAGTTCCTTTCAATGAAGCTTGAAGCAGTTAATTCAAGATTGAACATGAATTCTGTTGTTGAATGTTTTCCTTCAAAAGACGTTCAGGTTGGTAATCAGCCATTTGATATTGCCGGAATGATATTCGGATCACAAGCAACCAGGGGGTATGCACAGGGATCACAATCTGGATGGCTGCATATGCAATTAGGAGGTGATTTCGATAGAGTGGCATAA 768 0.487 MEGPVINESTFSSANPSSYSLSEIWPATATTFTPIHNHKRKESSPSSSTTTATANHLNDSYGNKHRKLEGSFQEENRAGDSKAVVGASLVAGNKLAREGGGGGGGGGAAKPSCEQPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLNMNSVVECFPSKDVQVGNQPFDIAGMIFGSQATRGYAQGSQSGWLHMQLGGDFDRVA 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g02006 255 CDD bHLH_AtBPE_like 120 202 - -
Aip01g02006 255 MobiDBLite consensus disorder prediction 1 20 - -
Aip01g02006 255 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 180 IPR011598 GO:0046983
Aip01g02006 255 PANTHER BNAC05G07950D PROTEIN 12 254 - -
Aip01g02006 255 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 12 254 IPR024097 GO:0006355
Aip01g02006 255 MobiDBLite consensus disorder prediction 44 59 - -
Aip01g02006 255 SMART finulus 136 186 IPR011598 GO:0046983
Aip01g02006 255 Gene3D - 127 205 IPR036638 GO:0046983
Aip01g02006 255 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 128 199 IPR036638 GO:0046983
Aip01g02006 255 MobiDBLite consensus disorder prediction 33 64 - -
Aip01g02006 255 Pfam Helix-loop-helix DNA-binding domain 134 181 IPR011598 GO:0046983
Aip01g02006 255 MobiDBLite consensus disorder prediction 96 116 - -
Aip01g02006 255 Coils Coil 177 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g02006 Aip-Chr1 107368100 107372081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g02006 1 255 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 43.945 9.54e-68 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip01g02006 HLH 1.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g02006 - - gmx:100799646 286.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g02006 01 107368100 107372081 Aip01g02006 01 107368100 107372081 ECH