Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01978 ATGGCTGGTGGTGAAGTTTTGAGGCAGAATTTACCTGAGAAGCTTGAGGAATCTCCTTCTGGTGCAAATGAGCTTCATGTTTTAGCTGTTGATGATAGTCTTGTGGATAGAAAGGTCATTGAACGTTTGCTCAAGATATCTTCTTGCAAAGTGACAGTGGTGGAGAGTGGAACTAGAGCTCTTCAGTATTTGGGGTTGGATGGGGATAAGAAAAGCTCCATTGGATTTGATAGTGTGAAGGTTAATTTGATAATGACTGATTATTCGATGCCGGGGATGACTGGTTATGATCTTCTCAAGAAAATCAAGGTGTGTAATTTGTTCTTAAGAGATTGA 336 0.4018 MAGGEVLRQNLPEKLEESPSGANELHVLAVDDSLVDRKVIERLLKISSCKVTVVESGTRALQYLGLDGDKKSSIGFDSVKVNLIMTDYSMPGMTGYDLLKKIKVCNLFLRD 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01978 111 Pfam Response regulator receiver domain 27 103 IPR001789 GO:0000160
Aip01g01978 111 MobiDBLite consensus disorder prediction 1 20 - -
Aip01g01978 111 Gene3D - 7 106 - -
Aip01g01978 111 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 110 IPR045279 GO:0009736
Aip01g01978 111 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR3-LIKE PROTEIN 9 110 - -
Aip01g01978 111 SUPERFAMILY CheY-like 23 103 IPR011006 -
Aip01g01978 111 ProSiteProfiles Response regulatory domain profile. 26 111 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01978 Aip-Chr1 105911585 105912220 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01978 4 108 Response Regulator Gene Family AT3G48100 66.355 8.63e-45 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aip01g01978 Response_reg 2e-10 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01978 K14492 - gmx:100796843 166.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01978 01 105911585 105912220 Aip01g01978 01 105911585 105912220 ECH
Aip01g01978 01 105911585 105912220 Aip01g01979 01 105912939 105913750 PCT