Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01975 atgacagccaaTCCCAACACTCGCCCTCGCCGACGTCATCACCTCACCCTCGCCGTCATCATCGCCTCGTCGTCGCTCTTGTCTCGCTATACCTCCTCCTCGCCGTCGCACCTCGTCTCGTCATTTGTTTTGGGAGAAGAAGGGGAAGGGAAGGGAAGGGGAAGGGGAAGGGTCATCGCCACCACTCCTCGCCGCTGCCGCTGCCGCTCTTCGCCGCCGCCGCTCCTGCTCCTCCTCATTCAGTCCTCGCCACTAGATCTCAACGTGAGGGTGGACATTGCGTGCCACGAGCCATTTTTGCTCCTCCTCCTCGCCCTCGCCGACGTCATCGCCTCACCCTCGCCGTCATCGTCGCCTCGCAGTCGCTCTCGTCTCTCCGCACCTCCTCCTCGCCGTCGCACCTCGTCTCGCCGCACCTCTTCCTCGCCGTCGCACCTCGTCTCGTCTTCTGATAATGATGATGATGATCATGATGATAATGGTGGTGGTGGTGGCGGTGGTGGTGGTGGTGGGTTCTGGTTCAACTTGGGCTTCTGTTCAGCTTCTGTTGATTTTGGGAAGAAGGGAGAAGGTTCAAGGCACCCTGTTCCCCAATCTCGCAAGCAAAAGGCCCTCGGTCTCCTATGCACTAATTTCCTGAGCTTGTATAATAGACATGACGTCCAATTCATCGGCCTCGACGATGCCGCCGCCCGATTAGGTGTTGAGAGAAGACGGATCTATGATATCGTCAATATTCTCGAGAGCATCGGGGTGCTTGCAAGAAAGGCCAAAAATCAATATACATGGAAAGGCTTTGGAGCAATTCCTGGAGCTTTTCATGAACTCAAGGAAGAGGGATTACGGGAGAATACATATGCTTTTGAAGGCGGAAATGACAACCTAAAAGGGTCTGATGACGAGGATGATGAAGAAGCATTTTCTAATACTGGGACCGGGAGTCAAAATGACAAGTCCAATTCCAATTCAAATTCAAATTCTACAACACTTTCCAAATCTCTCAAAAACGGTAATTTTTCTTTCTTTCCTTTTTCATGTTTTTTTCAAAGAAAATTAAGCAAATTCATTAGCCGATGTTTATCTTCAATGATAGAAATGATCTCCCTTGACGAGGCTGCGAATTTGTTGCTTGGAGATGGCCACAGTTCATCATTAATGAGAACAAAAGTAAGACGCCTATATGATATTGCAAATGTGTTGTCCTCCATGAACCTTATCGAGAAGACCCACACCACAGATACAAGAAAACCAGCATTCAGGTGGCTGGGTTTGAGAGGGAAGGCACCTAACGAGTCCATTCAAAATTGTTCAAATCCAAACGAGTCTAGGAAAAGAGCGTTTGGAACTGATGTCACAAACATCAGTTTTGAGAGGAACATAGTGGAATTAGGGGACTTTGCCTCTAAGAAGCTCAAAAAATTGGACAATGGTAGTGGCATAGGTCAAGCAAATAGTTTTCAACAAGCTTCAAAGGGTTTTCAGTTTGGTCCTTTTGCACCTTCTTATGTGCCCAAAGTTGGAACACCCGAGAATAATAGTGTGAAGAAGGTTCATGATTGGGACAGTCTAGCAATTAAACATCGTCCACAATACCAAAACCAAGCTTTAAGAGAACTATTCTCCCATTACATGGAAGCATGGAAATCGTGGTATTCAGAAGTTGTTGGGAAGAATCCAATGCAGATTTAA 1689 0.4737 MTANPNTRPRRRHHLTLAVIIASSSLLSRYTSSSPSHLVSSFVLGEEGEGKGRGRGRVIATTPRRCRCRSSPPPLLLLLIQSSPLDLNVRVDIACHEPFLLLLLALADVIASPSPSSSPRSRSRLSAPPPRRRTSSRRTSSSPSHLVSSSDNDDDDHDDNGGGGGGGGGGGFWFNLGFCSASVDFGKKGEGSRHPVPQSRKQKALGLLCTNFLSLYNRHDVQFIGLDDAAARLGVERRRIYDIVNILESIGVLARKAKNQYTWKGFGAIPGAFHELKEEGLRENTYAFEGGNDNLKGSDDEDDEEAFSNTGTGSQNDKSNSNSNSNSTTLSKSLKNGNFSFFPFSCFFQRKLSKFISRCLSSMIEMISLDEAANLLLGDGHSSSLMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGLRGKAPNESIQNCSNPNESRKRAFGTDVTNISFERNIVELGDFASKKLKKLDNGSGIGQANSFQQASKGFQFGPFAPSYVPKVGTPENNSVKKVHDWDSLAIKHRPQYQNQALRELFSHYMEAWKSWYSEVVGKNPMQI 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01975 562 SMART E2F_TDP_2 200 265 IPR003316 GO:0005667|GO:0006355
Aip01g01975 562 SMART E2F_TDP_2 350 423 IPR003316 GO:0005667|GO:0006355
Aip01g01975 562 MobiDBLite consensus disorder prediction 288 329 - -
Aip01g01975 562 Gene3D - 349 425 IPR036388 -
Aip01g01975 562 Gene3D - 195 268 IPR036388 -
Aip01g01975 562 PANTHER TRANSCRIPTION FACTOR E2F 196 554 IPR015633 GO:0000978|GO:0006357
Aip01g01975 562 Pfam E2F/DP family winged-helix DNA-binding domain 354 423 IPR003316 GO:0005667|GO:0006355
Aip01g01975 562 Pfam E2F/DP family winged-helix DNA-binding domain 201 265 IPR003316 GO:0005667|GO:0006355
Aip01g01975 562 SUPERFAMILY "Winged helix" DNA-binding domain 358 424 IPR036390 -
Aip01g01975 562 MobiDBLite consensus disorder prediction 112 148 - -
Aip01g01975 562 MobiDBLite consensus disorder prediction 112 164 - -
Aip01g01975 562 SUPERFAMILY "Winged helix" DNA-binding domain 199 263 IPR036390 -
Aip01g01975 562 MobiDBLite consensus disorder prediction 308 329 - -
Aip01g01975 562 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 196 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01975 Aip-Chr1 105405878 105424931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01975 199 560 E2F-DP Transcription Factor Family AT3G48160 51.070 2.24e-109 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Aip01g01975 E2F_TDP 1.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01975 K09391 - gmx:100806151 451.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01975 01 105405878 105424931 Aip01g01975 01 105405878 105424931 ECH
Aip01g01975 01 105405878 105424931 Aip01g01975 01 105405878 105424931 PCT