Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01974 ATGGAAACCCCAATCCCAACTCGACAGTTGTTCATTGACGGAGAATGGAAGCCCCCCATCCTCAGTAACAGAATTCCAATTATCAACCCTTCCACTCAGCAAGTCGTCGGGGACATTCCAGCTGCCACCAAGGAGGATGTAGACGCCGCCGTCGCCGCCGCTAGAAGAGCACTCAACCGCAACAAAGGCAACGACTGGCCTTCTGCTTCCGGTGCTCACCGAGCCCGCTATCTCCGCGCCATCGCTGCCAAGGTCGTCGAGAGAAAGGATCACCTCGCTAAGCTTGAATCCCTTGATTGCGGAAAACCACTCGATGAAGCTGCCTGGGACATGGATGATGTTGCTGGTTGCTTCGAGTTCTACGCTGACCTTGCGGAGAAACTCGACGCTAAGCAGAAGGCACCCGTTTCTCTTCCCATGGAAACTTTCAAGAGTTATGTCCTCAAAGAACCCATTGGTGTTGTTGGATTAATCACCCCATGGAACTATCCTCTGTTAATGGCTACATGGAAGGTTGCCCCTGCTCTGGCAGCTGGTTGTGCTGCGATATTGAAGCCTTCTGAATTGGCATCTGTGACATGTTTGGAGCTGGCTGACATATGCAAAGAAGTGGGCCTTCCTCCGGGTGTATTAAATATTCTCACTGGATTTGGCCCTGATGCTGGTGCTCCCTTAGCTTCCCACCCTGACGTAGACAAGATTGCCTTTACTGGAAGCTCTGCAACTGGAAGCAAGGTTATGACAGCTGCTGCACAATTAGTCAAGCCTGTCTCACTAGAGCTTGGTGGAAAAAGCCCAATCATTGTTTTTGAGGATGTTGATCTTGATAAGGCTGCTGAATGGACCCTCTTTGGTTGCTTCTGGACAAATGGTCAGATATGCAGTGCAACTTCCCGCCTTATTGTTCATGAAAGTATAGCAGCAAAATTTTTGGATACCCTTGTCAAATGGGCCAAAAACATCAAAATTTCAGATCCCTTTGAAGAAGGTTGCAGGCTAGGCCCGGTTGTTAGTGAAGGACAGTATGAAAAAATATTGAAGTTTATCTCAAATGCCAAGAGTGAGGGCGCAACCATTTTGACTGGTGGATCTCGTCCAGAGCATCTAAAGAATGGATTTTTTATTGAACCAACCATTATAACGGATGTGACTACCTCCATGCAAATTTGGAAAGAAGAAGTATTTGGACCCGTGCTCTGTGTAAAAACATTTAGTACCGAGGAAGAGGCTCTTGATCTAGCACATGACACCATCTATGGGTTAGGAGCTGCTGTCATTTCAAATGACCTTGAAAGATGTGATCGTGTATCTAAGGCGTTTAAGGCTGGAATTGTATGGATCAATTGCTCTCAACCATGTTTCACTCAAGCCCCATGGGGAGGCACGAAACGTAGTGGTACGCTTCTAACTTGTATTAATGCCAAATCTGGATAA 1434 0.4721 METPIPTRQLFIDGEWKPPILSNRIPIINPSTQQVVGDIPAATKEDVDAAVAAARRALNRNKGNDWPSASGAHRARYLRAIAAKVVERKDHLAKLESLDCGKPLDEAAWDMDDVAGCFEFYADLAEKLDAKQKAPVSLPMETFKSYVLKEPIGVVGLITPWNYPLLMATWKVAPALAAGCAAILKPSELASVTCLELADICKEVGLPPGVLNILTGFGPDAGAPLASHPDVDKIAFTGSSATGSKVMTAAAQLVKPVSLELGGKSPIIVFEDVDLDKAAEWTLFGCFWTNGQICSATSRLIVHESIAAKFLDTLVKWAKNIKISDPFEEGCRLGPVVSEGQYEKILKFISNAKSEGATILTGGSRPEHLKNGFFIEPTIITDVTTSMQIWKEEVFGPVLCVKTFSTEEEALDLAHDTIYGLGAAVISNDLERCDRVSKAFKAGIVWINCSQPCFTQAPWGGTKRSGTLLTCINAKSG 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01974 477 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1, CHLOROPLASTIC 1 466 - -
Aip01g01974 477 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 259 266 IPR029510 GO:0016491
Aip01g01974 477 Pfam Aldehyde dehydrogenase family 23 467 IPR015590 GO:0016491
Aip01g01974 477 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 24 467 IPR016162 GO:0016491
Aip01g01974 477 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 287 298 IPR016160 GO:0016491
Aip01g01974 477 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 458 IPR016163 GO:0016620
Aip01g01974 477 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1 466 - -
Aip01g01974 477 SUPERFAMILY ALDH-like 4 467 IPR016161 GO:0016491
Aip01g01974 477 CDD ALDH_F10_BADH 27 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01974 Aip-Chr1 105397499 105400473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01974 1 466 Aldehyde Dehydrogenase Gene Family AT1G74920 83.691 0.0 811
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01974 K00130 - gmx:100170731 832.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01974 01 105397499 105400473 Aip01g01974 01 105397499 105400473 ECH
Aip01g01974 01 105397499 105400473 Aip01g01974 01 105397499 105400473 PCT