Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aip01g01954 | ATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTCGAAAAGGGTGGACAATTAGCTAGAGCAGCAAGTGCTGTAGTGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAACAGTCGGACAAGTGGGGAATGTTGGGGTAAACCAGAAAACTTTGGGTAGATCCGGATCTAAATGTTGGATAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGATCATCCCATAGGGGTAGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAAACCCGCAACTCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGATTCTTCGTCGCCGTAGTAAATAG | 429 | 0.4382 | MPLGTAIHNIEITLEKGGQLARAASAVVKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKTLGRSGSKCWIGKRPVVRGVVMNPVDHPIGVVKGGPQLVEKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK | 142 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aip01g01954 | 142 | SUPERFAMILY | Translation proteins SH3-like domain | 1 | 139 | IPR008991 | - | |
| Aip01g01954 | 142 | SMART | Ribosomal_L2_C_2 | 1 | 119 | IPR022669 | GO:0003735|GO:0005840|GO:0006412 | |
| Aip01g01954 | 142 | TIGRFAM | rplB_bact: ribosomal protein uL2 | 1 | 141 | IPR005880 | GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 | |
| Aip01g01954 | 142 | Pfam | Ribosomal Proteins L2, C-terminal domain | 1 | 117 | IPR022669 | GO:0003735|GO:0005840|GO:0006412 | |
| Aip01g01954 | 142 | ProSitePatterns | Ribosomal protein L2 signature. | 84 | 95 | IPR022671 | GO:0003735|GO:0005840|GO:0006412 | |
| Aip01g01954 | 142 | PANTHER | RIBOSOMAL PROTEIN L2 | 1 | 139 | IPR002171 | GO:0003735|GO:0005840|GO:0006412 | |
| Aip01g01954 | 142 | Gene3D | - | 1 | 62 | IPR014722 | - | |
| Aip01g01954 | 142 | Gene3D | Ribosomal protein L2, domain 3 | 63 | 141 | IPR014726 | - | |
| Aip01g01954 | 142 | PANTHER | 39S RIBOSOMAL PROTEIN L2, MITOCHONDRIAL | 1 | 139 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aip01g01954 | Aip-Chr1 | 103972710 | 103973138 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aip01g01954 | 1 | 99 | Cytoplasmic Ribosomal Protein Gene Family | AT3G51190 | 39.091 | 2.51e-15 | 68.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aip01g01954 | K02886 | - | cpap:5878399 | 244.588 |