Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01946 ATGGCAACATTTGGAGGCACAACACAGAAGTGCAGAGCATGTGAAAAGAAGGTGTATTGGGTGGAACAGCTCACTGCTGACAACAAGGTCTACCATAAATCTTGCTTCAGATGTCACCATTGCAAGGGTACCCTCAAGCTGAGTAATTATTGTTCATTTGAGGGAGTTCTATACTGCAAGCCTCATTTTGATCAACTTTTTAAGATGACTGGCAGCTTGGACAAAAGTTTTGAAGGGACTCAAGAAAAGTGTGTTGGTTGCAAGAAAACAGTATACCCTATTGAAAAGGTGGGTGTTGATGGGAAATGTTACCATAAGGGATGCTTCAGGTGCAGCCATGGAGGGTGTGTAATAAGCCCATCAAATTATGTGGCCCATGAACATCGCCTTTATTGCAAGCACCACCATACTCAGCTCTTCAAGCAAAAGGGTAACTTCAGCCAATTTGACATTCATCAAAATGGCCATAGCAATGGCCACGGGATTTCTGAGAATGATAACACAAATTCTTCTTATGAGCAGTAA 525 0.4229 MATFGGTTQKCRACEKKVYWVEQLTADNKVYHKSCFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGTQEKCVGCKKTVYPIEKVGVDGKCYHKGCFRCSHGGCVISPSNYVAHEHRLYCKHHHTQLFKQKGNFSQFDIHQNGHSNGHGISENDNTNSSYEQ 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01946 174 SMART lim_4 83 135 IPR001781 -
Aip01g01946 174 SMART lim_4 10 62 IPR001781 -
Aip01g01946 174 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 77 155 - -
Aip01g01946 174 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 79 - -
Aip01g01946 174 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Aip01g01946 174 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 77 109 - -
Aip01g01946 174 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Aip01g01946 174 PANTHER OS06G0237300 PROTEIN 77 155 IPR045268 GO:0051015
Aip01g01946 174 PANTHER OS06G0237300 PROTEIN 1 79 IPR045268 GO:0051015
Aip01g01946 174 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 110 148 - -
Aip01g01946 174 ProSiteProfiles LIM domain profile. 82 142 IPR001781 -
Aip01g01946 174 Gene3D Cysteine Rich Protein 78 148 - -
Aip01g01946 174 Gene3D Cysteine Rich Protein 6 75 - -
Aip01g01946 174 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 36 - -
Aip01g01946 174 Pfam LIM domain 11 65 IPR001781 -
Aip01g01946 174 Pfam LIM domain 84 139 IPR001781 -
Aip01g01946 174 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01946 Aip-Chr1 103677024 103678080 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Aip01g01946 LIM 2.7e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01946 K09377 - gmx:100792627 307.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01946 01 103677024 103678080 Aip01g01946 01 103677024 103678080 ECH
Aip01g01946 01 103677024 103678080 Aip01g01946 01 103677024 103678080 PCT