Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01943 ATGAAAGAGGTTCTTAGGTCCTGTATGGAAGGCGCATTTGCGGATGAGGCGGTATTGGATGGAGTGAGTGAAAGGGTGGGGGACGCTGCCTTTGAAGAGGAAATAGTACAAGACATGGGAATGGAAGATGAAGAGGTTGAGGAAGCTGCTCGTATATATGAAGAGTACAGCCGGGTGAAGGGTTTTGCTGTTCGACAAGGTAAGAAGATAAAAAACAAGAGAGGAGAATTTGTGTGGATTACGTATTTGTGCAATAGAGAAGGTTTTCGGAACAAGAAATGGTTAGAAAAGCAGGATCGCAAAAGAGAGCACAAGGTTGTCACCCGTTGTGGGTGTCCTGCCAAGATGCGGATAAAGCCAAGAATTGGCACGGGAAAGTGGTTTGTGGCACGTTTTGTGAATGACCATAACCATGATCTCTTGCCTCAAAAGTTTGTGGAGTACTTGCCTGCGCATAGGAGGATTTCGGATGTTGACATAGCGCACATGGATAGCCTGCGGCAAGTGGGAATTTCAATCCCGAAAATATACGAGTCAATAGCAGCACAAGCTGGGGGTTTCAACCGTTTATCATTCACCAAGCGAGACATGTACAACGAGGTTAGGCGACAACGGTCCTTGCAGAATGGTGATGTCAATGCAGCACTAAGGTTCTTGGAGGTGGCTTCTAGGAGAGATGAGAAGATGTATTGGAGGTACGAGGTAGGGGTTGGTCAACACATGTGTGACTTATTCTGGAGTGACGGTCGTAGTCAGGAGGATTTCAAATTATTCGGTGATGTTCTTGCCTTTGATGCTACCTACGGACGAAACAAATACAATCTTCCAGTCGTTGTTTTCTCTGGGGTTAACAATCACAACCAGACATGTGTTTTTGCAACCGCAATGGTATCAAGTGAAACACAATCTTCGTATGTATGGGTTCTAAGAAAATTTCTTGAATGTATGGATGGCAGAGCTCCGAAGGCCATAATAACTGACGGGGATAGATCAATGCGACTAGCTATCCATGAGGTCTTTCCCGATGCTCATCATAGGCTTTGCGCATGGCACCTATTGAAAAATGCTATTTCCAATGTATGTATGCCGAGGTTCACATCCTTGTTTAGGCACTGCATGCTAGCAGACATAGAGGTGGAGGAGTTTGAGTTGCAGTGGGAAGCGATGGTGAGTGAGTGTGGCGTGAAGGATCATAAGTGGGTGAAGGATTTATACTCGAAGAAATTGTTGTGGGCCACAGCTTACATACGTGGAAGGTTCTTTGCTGGCATTAGGATGACTTCCCGATGCGAATCATTGCATGCGAAGCTTGGGCGGTTTGTGGAGAGCAGGTACGGGATTCTTGAATTCATAACAAATTTCCAGCAGTGTGTGGAATTCCTCAGAGACAACGAAGATGAGCTAGAGTTTCGATCATCATATGGGACCCCTGTAATCCAAACAGAGTTTCCCGAGCTGGAAAAATCAGGTGCAATGAATTTCACACGTGAGATTTTTGCAAGATACCGGGAGTCGTTGAAGAGGTGTGTGCGTGTTACAGTGTTAGGGTGCATAGAATCGGAAGGCACATGTACATACGTGACTCAGAAATATAGGAGGCCAGAGAAGAGGTGGAGCGTGACTCACCATGGAATGTCCGACACTTTTGTATGCACTTGCTTAAGGATGGAATCTTTCAGACTTCCTTGCGTCCACATACTTGCAGTGCTTGTCCGATTAGACATTGGGTCCCTCCCGAAGAGCCTGGTGCTGCAACGATGGTCGAAGGCAGCCAAGGTTGAAATGTCTGGGGTTAATCAAGTCGACAACACGGAGGCGTTTTATCGTAGCCGTGTTGGTGCGTTCTTGCAACATTGCAAAAGGTTCGCTCGGGTTGCTTGTCAGAGTGAAGAGAACTTCAAGGTGTACACAGAGAAAGTGGTAAAGGACACACTGAGGCTAGAAATGATAAATGGGGACGCTGGTGCTGGTGCAGGGAGTCCTCATGCGGCGCAGGGGGTTAGAGACCCAATTGGCGTTCGCACAAAGGGGACCGGGCGTGCTAATGAGCTGGTTGGTTCAAGGGCTGTCAAGCGGAGGAAGTGCAGCACATGCGGTTGCCTAGGTCATAGACGTACTCGATGTCCCAACGGGCCACGAGTAACAACTTCATATACAGAGCAGAACACCATGCCAAGTCAGCGTATGCCTAATAGAGACCTAACGGTGTCATATGCTGGCAATGAAAGCAACACTTGTCGAAGGAGGGTAGGCTAA 2256 0.4738 MKEVLRSCMEGAFADEAVLDGVSERVGDAAFEEEIVQDMGMEDEEVEEAARIYEEYSRVKGFAVRQGKKIKNKRGEFVWITYLCNREGFRNKKWLEKQDRKREHKVVTRCGCPAKMRIKPRIGTGKWFVARFVNDHNHDLLPQKFVEYLPAHRRISDVDIAHMDSLRQVGISIPKIYESIAAQAGGFNRLSFTKRDMYNEVRRQRSLQNGDVNAALRFLEVASRRDEKMYWRYEVGVGQHMCDLFWSDGRSQEDFKLFGDVLAFDATYGRNKYNLPVVVFSGVNNHNQTCVFATAMVSSETQSSYVWVLRKFLECMDGRAPKAIITDGDRSMRLAIHEVFPDAHHRLCAWHLLKNAISNVCMPRFTSLFRHCMLADIEVEEFELQWEAMVSECGVKDHKWVKDLYSKKLLWATAYIRGRFFAGIRMTSRCESLHAKLGRFVESRYGILEFITNFQQCVEFLRDNEDELEFRSSYGTPVIQTEFPELEKSGAMNFTREIFARYRESLKRCVRVTVLGCIESEGTCTYVTQKYRRPEKRWSVTHHGMSDTFVCTCLRMESFRLPCVHILAVLVRLDIGSLPKSLVLQRWSKAAKVEMSGVNQVDNTEAFYRSRVGAFLQHCKRFARVACQSEENFKVYTEKVVKDTLRLEMINGDAGAGAGSPHAAQGVRDPIGVRTKGTGRANELVGSRAVKRRKCSTCGCLGHRRTRCPNGPRVTTSYTEQNTMPSQRMPNRDLTVSYAGNESNTCRRRVG 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01943 751 ProSiteProfiles Zinc finger SWIM-type profile. 538 574 IPR007527 GO:0008270
Aip01g01943 751 PANTHER OS02G0262500 PROTEIN 41 651 - -
Aip01g01943 751 Pfam FAR1 DNA-binding domain 52 142 IPR004330 -
Aip01g01943 751 Pfam MULE transposase domain 261 355 IPR018289 -
Aip01g01943 751 Pfam SWIM zinc finger 551 571 IPR007527 GO:0008270
Aip01g01943 751 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 41 651 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01943 Aip-Chr1 103601121 103604322 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip01g01943 MULE 1e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01943 - - aip:107620408 920.998