Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01942 ATGTTATTTCGTCGCGCCGCCGTCTCCCTCTCCCTCACTCGTCGCACCTCCGTTTCCCTCTCTCAACCCTCCTCCTTGCCACCCGTCAGCGCCAACTGTCAGCCACGTTCAGCGTTCGCAGCGCTGTGCTGTGGTAGTGCTCAGCTGCTGCTAGGTGGTGGTGAACTGCTAGTGCTTTGCCTGTTCTGTTCTGCTAGTTTTTCTACATCAACTATCAGCAGTTGGAAATGGTTAAAAGTTATGGAGTATTTTGATTTACAACTTGGAGAGATACTTCTTTTACTCCTATGTGGAGTTTCTTATCCATCTCCATATGCAAATCCAGATGTGTTGTTAACCAAGTATTTGGGTGAATATGACAAAGAAGAAAAGGCTGCGAGAGCTTATGATTTGGCAGCTTTAAAGTATTGGGGTCCCACTGCTACCGCCAACTTCCCGGTTTCCAATTACCCAAAGGGACTGGAGGAGATGAAACACGTAACAAAGCAAGAATTCATTGCATCACTGAGAAGGAAAAGTAGTGGCTTTTCCAGGGGAGCTTCCATATACAGAGGTGTGACAAGGCATCACCAACAAGGGAGGTGGCAAGCAAGAATTGGTCGAGTTGCCGGAAACAAAGATCTTTACTTGGGAACATTCGGTAAGTATTTCACCTTCATTTTCCATTGTGTTCCTGTGTTAACGAAGATGATTATTCAAATTGCTGAGTTTCATATACTATATGCTGATCTTATGTTATCACTTAATCCTTTTCTTAAGGACAACATTAACAATAACATCAAGAAGAAGAAGAAGAAATGGGCGATCGTTAAGAAAAAGAGAAAAGACTTTCACCGCGTCGACCTCACGAGGCTGCTTCCTTTTATGCCGGAGAAGCTTGAGGAGGAGAAGAGCTCCGAAAAGTGGATTACGAGTTTTAGGCTAACTGGACTGGCTAAGGGTGGCGTGATGAATGTTAGTTTTGGGTATCTGGTTGTTGGTGATAATAGGAACGTAAAAGAAGGAAATAATAACGGACTCTGA 1023 0.4409 MLFRRAAVSLSLTRRTSVSLSQPSSLPPVSANCQPRSAFAALCCGSAQLLLGGGELLVLCLFCSASFSTSTISSWKWLKVMEYFDLQLGEILLLLLCGVSYPSPYANPDVLLTKYLGEYDKEEKAARAYDLAALKYWGPTATANFPVSNYPKGLEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFGKYFTFIFHCVPVLTKMIIQIAEFHILYADLMLSLNPFLKDNINNNIKKKKKKWAIVKKKRKDFHRVDLTRLLPFMPEKLEEEKSSEKWITSFRLTGLAKGGVMNVSFGYLVVGDNRNVKEGNNNGL 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01942 340 Gene3D AP2/ERF domain 182 216 IPR036955 GO:0003700|GO:0006355
Aip01g01942 340 Gene3D AP2/ERF domain 107 148 IPR036955 GO:0003700|GO:0006355
Aip01g01942 340 ProSiteProfiles AP2/ERF domain profile. 182 213 IPR001471 GO:0003700|GO:0006355
Aip01g01942 340 SUPERFAMILY DNA-binding domain 181 215 IPR016177 GO:0003677
Aip01g01942 340 ProSiteProfiles AP2/ERF domain profile. 115 146 IPR001471 GO:0003700|GO:0006355
Aip01g01942 340 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 115 214 - -
Aip01g01942 340 SUPERFAMILY DNA-binding domain 114 148 IPR016177 GO:0003677
Aip01g01942 340 SMART rav1_2 182 224 IPR001471 GO:0003700|GO:0006355
Aip01g01942 340 SMART rav1_2 97 152 IPR001471 GO:0003700|GO:0006355
Aip01g01942 340 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 115 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01942 Aip-Chr1 103596214 103600901 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01942 115 213 AP2-EREBP Transcription Factor Family AT5G65510 89.899 1.56e-57 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip01g01942 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01942 K09285 - zju:107425151 200.675